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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggtcctcaccgcagtcaactatttactctgcatatcattaattaactttctgatgcattttgtttcctccaacacttgctgtgctactgctactaatttcccaatgccagtccaaccaaccacttgcctgaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTCACAAC

Basic information

species Zea mays
transcript GRMZM2G000510_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000510_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g48040.1 (Oryza sativa), 3'ss of exon 2
gtacggtcctcaccgcagtcaactatttactctgcatatcattaattaactttctgatgcattttgtttcctccaacacttgctgtgctactgctactaatttcccaatgccagtccaaccaaccacttgcc-tgaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCT-CACAAC--
                                                         | | |   ||   | ||    ||| |  |  |     |   |   |  |  |   | || | || ||   | ||  |       ||||| |||||||||||||| ||||||||||| || |||||||| ||| |  |||||||||| || ||||||| ||| ||  
--------------------------------------------------------gtccgtaccgtactcccccctccttcccctcatttccttttcatcctgtcgctattattcaaccccacgcttcgcaatcgcaacgcagGTGAAATCCTTCTACGTTGGCAAAGACCATGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211227505|gb|FL377297.1|FL377297
EST:     TCCACCGACAGTGCATCTACGGGGGGCTACGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGAACCATGTTGGGGATGTCCCTTTGTC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGA-CCACGTTGGGGATGTCCCTTTGTC
EST: gi|211415548|gb|FL372632.1|FL372632
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|149014447|gb|EE044057.2|EE044057
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|71332543|gb|DR803241.1|DR803241
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|78179369|gb|DV549742.1|DV549742
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|93281478|gb|EB673742.1|EB673742
EST:     TCCACCGACAGTGCATCTACGGGAGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|89249688|gb|DY621474.1|DY621474
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|31349105|gb|CD433462.1|CD433462
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|71447490|gb|DR828540.1|DR828540
EST:     TCCACCGGCAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|211234204|gb|FK951232.1|FK951232
EST:     TCCACCGACAGTGCATCTACGGGGGGCTACGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCATGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|149072257|gb|EE160513.2|EE160513
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|6827024|gb|AW330667.1|AW330667
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|148947408|gb|EC892822.2|EC892822
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|93015136|gb|EB640656.1|EB640656
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|211234205|gb|FK951233.1|FK951233
EST:     TCCACCGGCAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|211395191|gb|FL388870.1|FL388870
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGAT
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGAT
EST: gi|211527528|gb|FL409931.1|FL409931
EST:     TCCACCGACAGTGCATCTACGGGGGGCTACGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCATGTTGGGGATGTCC-TTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|211253778|gb|FL369138.1|FL369138
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|31363588|gb|CD447945.1|CD447945
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|76292715|gb|DV032283.1|DV032283
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|71437391|gb|DR818441.1|DR818441
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|12045964|gb|BF727999.1|BF727999
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|67028232|gb|CO456981.1|CO456981
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|211285989|gb|FL388300.1|FL388300
EST:     TCCACCGACAGTGCATCTACGGGGGACTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|78109062|gb|DV527479.1|DV527479
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|211207011|gb|FL394633.1|FL394633
EST:     TCCACCGACAGTGCATCTACGGGGGGCTACGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGC
EST: gi|50333857|gb|CO528983.1|CO528983
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|211209142|gb|FL374139.1|FL374139
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTNGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|76291091|gb|DV030659.1|DV030659
EST:     TCCACCGGCAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|211159830|gb|FL401308.1|FL401308
EST:     TCCACCGACAGTGCATCTACGGGGGGCTACGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCA
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCA
EST: gi|148931428|gb|EC874386.2|EC874386
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|148954532|gb|EC899968.2|EC899968
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|78108615|gb|DV527033.1|DV527033
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCAAGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|76911479|gb|DV164289.1|DV164289
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|88751922|gb|DY536063.1|DY536063
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|148986615|gb|EE030385.2|EE030385
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCCACGTTGGGGATGTCCCTTTGTC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACC-ACGTTGGGGATGTCCCTTTGTC
EST: gi|76294190|gb|DV033758.1|DV033758
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|148932353|gb|EC875981.2|EC875981
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|76281516|gb|DV021084.1|DV021084
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|22545542|gb|BU097901.1|BU097901
EST:     CCCACCGACAGGGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|211229469|gb|FL370963.1|FL370963
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|149110174|gb|EE293989.2|EE293989
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|71303282|gb|DR787744.1|DR787744
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|71437614|gb|DR818664.1|DR818664
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|50324459|gb|CO519585.1|CO519585
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
EST: gi|31348998|gb|CD433355.1|CD433355
EST:     TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCT                         GTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC
genomic: TCCACCGACAGTGCATCTACGGGGGGCTCCGCATTGGCCTCTACGAGCCTgtacggtcct ... gaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgctactaatttcccaatgccagtccaaccaaccacttgcctgaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTCACAAC
      tactaat  putative branch site (score: 1)
      tactaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacggtcctcaccgcagtcaactatttactctgcatatcattaattaactttctgatgcattttgtttcctccaacacttgctgtgctactgctactaatttcccaatgccagtccaaccaaccacttgcctgaacttacagGTCAAATCCTTCTACGTCGGCAAAGACCACGTTGGGGATGTCCCTTTGTCCAAGAAGATAGCCGCCGGCTCACAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG