1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagttccattctttttagctttcaccatgtgcccaaaagtttatcttgagggaatgtcatgaacatttttttcatcatttttattcatcagGCTTCATGGGGTCTGTGAAGAAAATCCCTTGGCACCAATAATTGGAAGGCTTGGACTTCCACTGTACCGCACAAGTGGTGATGATTCTGTGCTGTTTGAT
species | Zea mays |
transcript | GRMZM2G000052_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTCACACTGACTACTCTTTTGGGTTTCCGGTCGATTTGGGAGCATCTTG GCTTCATGGGGTCTGTGAAGAAAATCCCTTGGCACCAATAATTGGAAGGCTEST: gi|211121516|gb|FL031381.1|FL031381
genomic: GTTCACACTGACTACTCTTTTGGGTTTCCGGTCGATTTGGGAGCATCTTGgtgagttcca ... tattcatcagGCTTCATGGGGTCTGTGAAGAAAATCCCTTGGCACCAATAATTGGAAGGCT
EST: GTTCACACTGACTACTCTTTTGGGTTTCCGGTCGATTTGGGAGCATCTTG GCTTCATGGGGTCTGTGAANGAAA-TCCCTTGGCACCAATAATTGGAAGGCEST: gi|211442379|gb|FL324386.1|FL324386
genomic: GTTCACACTGACTACTCTTTTGGGTTTCCGGTCGATTTGGGAGCATCTTGgtgagttcca ... tattcatcagGCTTCATGGGGTCTGTGAA-GAAAATCCCTTGGCACCAATAATTGGAAGGC
EST: GTTCACACTGACTACTCTTTTGGGTTTCCGGTCGATTTGGGAGCATCTTG GCTTCATGGGGTCTGTGAAGAAAATCCCTTGGCACCAATAATTGGAAGGCTEST: gi|211300846|gb|FL383949.1|FL383949
genomic: GTTCACACTGACTACTCTTTTGGGTTTCCGGTCGATTTGGGAGCATCTTGgtgagttcca ... tattcatcagGCTTCATGGGGTCTGTGAAGAAAATCCCTTGGCACCAATAATTGGAAGGCT
EST: GTTCACACTGACTACTCTTTTGGGTTTCCGGTCGATTTGGGAGCATCTTG GCTTCATGGGGTCTGTGAAGAAAATCCCTTGGCACCAATAATTGGAAGGCTEST: gi|211514296|gb|FL420360.1|FL420360
genomic: GTTCACACTGACTACTCTTTTGGGTTTCCGGTCGATTTGGGAGCATCTTGgtgagttcca ... tattcatcagGCTTCATGGGGTCTGTGAAGAAAATCCCTTGGCACCAATAATTGGAAGGCT
EST: GTTCACACTGACTACTCTTTTGGGTTTCCGGTCGATTTGGGAGCATCTTG GCTTCATGGGGTCTGTGAAGAAAATCCCTTGGCACCAATAATTGGAAGGCT
genomic: GTTCACACTGACTACTCTTTTGGGTTTCCGGTCGATTTGGGAGCATCTTGgtgagttcca ... tattcatcagGCTTCATGGGGTCTGTGAAGAAAATCCCTTGGCACCAATAATTGGAAGGCT
aagtttatcttgagggaatgtcatgaacatttttttcatcatttttattcatcagGCTTCATGGGGTCTGTGAAGAAAATCCCTTGGCACCAATAATTGGAAGGCTTGGACTTCCACTGTACCGCACAAGTGGTGATGATTCTGTGCTGTTTGAT
tttttttcatcatttt CT-rich tract
atgaacatttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttccattctttttagctttcaccatgtgcccaaaagtttatcttgagggaatgtcatgaacatttttttcatcatttttattcatcagGCTTCATGGGGTCTGTGAAGAAAATCCCTTGGCACCAATAATTGGAAGGCTTGGACTTCCACTGTACCGCACAAGTGGTGATGATTCTGTGCTGTTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT