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...ctttctatatgatatgctaacattatagacttctattgttcatgcggccttcgaagaatgatttgaaatgttttaccatgttgttcatgcaccattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCTGCACAACAAATTCTGGAGGAGAGGAAGCTTAACCAAACATTACTAGCCA
species | Zea mays |
transcript | AC235544.1_FGT004 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCTEST: gi|211510351|gb|FL119756.1|FL119756
genomic: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCT
EST: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCTEST: gi|71770990|gb|DR968927.1|DR968927
genomic: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCT
EST: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCTEST: gi|211232015|gb|FL402276.1|FL402276
genomic: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCT
EST: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCTEST: gi|149040625|gb|EE046866.2|EE046866
genomic: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCT
EST: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCTEST: gi|71312838|gb|DR792945.1|DR792945
genomic: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCT
EST: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCTEST: gi|94476717|gb|EB705675.1|EB705675
genomic: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCT
EST: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATG ATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCT
genomic: CCTTCGTCCGCGCGCAGCTCGAGAGCTTCGATGGCCACCTCGAGGCCATGgtaatgcggc ... accattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCT
ggccttcgaagaatgatttgaaatgttttaccatgttgttcatgcaccattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCTGCACAACAAATTCTGGAGGAGAGGAAGCTTAACCAAACATTACTAGCCA
atttgaaatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttctatatgatatgctaacattatagacttctattgttcatgcggccttcgaagaatgatttgaaatgttttaccatgttgttcatgcaccattgtagATAGAGGAGATACCAAACTTAACATCTGGCTGCACTGAGTTTGTTGAGTCTGCACAACAAATTCTGGAGGAGAGGAAGCTTAACCAAACATTACTAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - -atgctaa
- - - - - - - - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg