1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcaagaagaggtgacaagttctttagtttttcactgtttctgattgtgtgttgctagaattcattacttgatataattatgtgtcttgtccttttttcagATTCTAAGAGTGTTGCTTCCATTATTGGTGACCTTGAGGTTATAGATGCCATGACTAATCTGGCAGCTCAG
species | Zea mays |
transcript | AC231753.1_FGT003 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gtgtgttgctagaattcattacttgatataattatgtgtcttgtccttttttcagATTCTAAGAGTGTTGCTTCCATTATTGGTGACCTTGAGGTTATAGATGCCATGACTAATCTGGCAGCTCAG
acttgat putative branch site (score: 5)
tgtcttgtcctttttt putative PPT
aattcattacttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagaagaggtgacaagttctttagtttttcactgtttctgattgtgtgttgctagaattcattacttgatataattatgtgtcttgtccttttttcagATTCTAAGAGTGTTGCTTCCATTATTGGTGACCTTGAGGTTATAGATGCCATGACTAATCTGGCAGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- aagaagag
- - - - - - - - - - - - - - - - - tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacttg