1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgctgataggtcgacgatgacgatacctatctttgtgagacatgcctccggagagctagctgtgaaagctgatctggatgactggatgcgcctttgcagAATCTGATGCAATTGTATGCACAGAGGACAAACACAGTGCTAGGAGACCAGTATCTTGTGTATGGCAACACGAGACTTGAGCCTACTGCCACCCTTCTAT
species | Zea mays |
transcript | AC226327.2_FGT004 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
cctccggagagctagctgtgaaagctgatctggatgactggatgcgcctttgcagAATCTGATGCAATTGTATGCACAGAGGACAAACACAGTGCTAGGAGACCAGTATCTTGTGTATGGCAACACGAGACTTGAGCCTACTGCCACCCTTCTAT
agctgat putative branch site (score: 4)
cgccttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctgataggtcgacgatgacgatacctatctttgtgagacatgcctccggagagctagctgtgaaagctgatctggatgactggatgcgcctttgcagAATCTGATGCAATTGTATGCACAGAGGACAAACACAGTGCTAGGAGACCAGTATCTTGTGTATGGCAACACGAGACTTGAGCCTACTGCCACCCTTCTAT
-tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgc