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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttacatgcttgcactctagctttatcagaatctgcattacctttcatttaatggaccctttgcaggttgcttcaaagtttacccttgttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTCAACCGGATGGCTGAGCAGCTACAGAGAAGTGCTCAAAGCACAGGAGAAC

Basic information

species Zea mays
transcript AC215244.3_FGT002
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC215244.3_FGT002 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g42690.1 (Oryza sativa), 3'ss of exon 2
gttttacatgcttgcactc-tagctttatcagaatctgcattaccttt-catttaatggaccctttgcaggttgcttcaaagtttacccttgttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTCAACCGGATGGCTGAGCAGCTACAGAGAAGTGCTCAAAGCACAGGAGAAC-
 ||||||||| |    |     || |  |     | |  |||   |   | ||   |   |||||| ||  ||||||||| || | | |   |  | | |||||||||||| | |||||||| |||||||| ||||||| ||| ||||| |||| || |||||| ||||||  || |  | | |     || |||||  |   
attttacatgatcctgccagctgcatacttgcgctttagattttatgaaccttcggtactcccttttcaa-ttgcttcaa-gtctccaccaatgtttttcagGATCCATCTGTAAAGGAGATAGCAGATCAGATTGCAAAGGACCCTGCGTTCACCCAGATGGCGGAGCAGGCACTGGAAGGCGAA-GGAGAACAGGGCATGC

upper sequence: AC215244.3_FGT002 (Zea mays), 3'ss of exon 2
lower sequence: Vv03s0038g04270.t01 (Vitis vinifera), 3'ss of exon 3
gttttacatgcttgcactctagctttatcagaatctgcattacctttcatttaatggaccctttgcaggttgct--tcaaagtttaccct-tgttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTCAACCGGATGGCTGAGCAGCTACAGAGAAGTGCTCAAAGCACAGGAGAAC
||  | |||  || |     ||  ||||  |  | |   | |   |||| ||||       || |    |||||  | || || ||     || ||     ||||||||   ||||| ||  | ||||| || |||||||  |||||||||||||||| |||||| |||||||| || |  | |  |||  |  ||| ||   
gtagttcatcatttcctcaaagaattatt-gtttgtttttcaaagttcaattaactagtt-ttagtttattgctcattaatgtctatggaatgatac-catagGATCCAAGCATTAAAGAATTAGCAGAACAGATTGCAAAAGATCCTGCATTCAACCAGATGGCAGAGCAGCTCCAAAAGACTTTTCATGGTGCAGCAGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148987136|gb|EE030964.2|EE030964
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|33101202|gb|CF061162.1|CF061162
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|148960887|gb|EE011568.2|EE011568
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|61119717|gb|DN560678.1|DN560678
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|211029954|gb|FL292225.1|FL292225
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|211029957|gb|FL292228.1|FL292228
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|91877255|gb|EB407212.1|EB407212
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAGT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|67014523|gb|CO443272.1|CO443272
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|211029955|gb|FL292226.1|FL292226
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|33091086|gb|CF051080.1|CF051080
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|32829236|gb|CD968914.1|CD968914
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|20802913|gb|BQ293963.1|BQ293963
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|22543322|gb|BU093760.1|BU093760
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|149101806|gb|EE287398.2|EE287398
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|148991451|gb|EE032956.2|EE032956
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|32829793|gb|CD969471.1|CD969471
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|149096549|gb|EE182298.2|EE182298
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|149073854|gb|EE162176.2|EE162176
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|32915071|gb|CF019883.1|CF019883
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|149110681|gb|EE190549.2|EE190549
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|149031642|gb|EE286361.2|EE286361
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|32828517|gb|CD968195.1|CD968195
EST:     AGGCTTTTC-AATCCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: AGGCTTTTCAAAT-CCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|211029958|gb|FL292229.1|FL292229
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|32830286|gb|CD969964.1|CD969964
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|22133691|gb|BQ833852.1|BQ833852
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|148956070|gb|EC901821.2|EC901821
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|148986784|gb|EE030580.2|EE030580
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|93282045|gb|EB674309.1|EB674309
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|149100032|gb|EE186084.2|EE186084
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|149089140|gb|EE178326.2|EE178326
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|78115069|gb|DV533457.1|DV533457
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|87152225|gb|DY397014.1|DY397014
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|32850436|gb|CD990117.1|CD990117
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|149096548|gb|EE182297.2|EE182297
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|148934581|gb|EC878630.2|EC878630
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|32829506|gb|CD969184.1|CD969184
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
EST: gi|71428233|gb|DR809283.1|DR809283
EST:     CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAAT                         GATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC
genomic: CAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 157

AACTCCAAAATCCGAAGGGTCTTCCGACGAACGTCAAGGGCTTCCTCCAGCAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTCAACCGGATGGCTGAGCAGCTACAGAGAAGTGCTCAAAGCACAGGAGAAC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 323

AACTCCAAAATCCGAAGGGTCTTCCGACGAACGTCAAGGGCTTCCTCCAGCAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTCAACCGGATGGCTGAGCAGCTACAGAGAAGTGCTCAAAGCACAGGAGAAC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 214

AACTCCAAAATCCGAAGGGTCTTCCGACGAACGTCAAGGGCTTCCTCCAGCAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTCAACCGGATGGCTGAGCAGCTACAGAGAAGTGCTCAAAGCACAGGAGAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 210

AACTCCAAAATCCGAAGGGTCTTCCGACGAACGTCAAGGGCTTCCTCCAGCAGGCTTTTCAAATCCTTTTGATTTTGGTTCTATGCAAAGTTTGCTCAATgtatgcccct ... ttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTCAACCGGATGGCTGAGCAGCTACAGAGAAGTGCTCAAAGCACAGGAGAAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatttaatggaccctttgcaggttgcttcaaagtttacccttgttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTCAACCGGATGGCTGAGCAGCTACAGAGAAGTGCTCAAAGCACAGGAGAAC
   atttaat  putative branch site (score: 210)
                                       cccttgtt  putative PPT
                               aaagttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttttacatgcttgcactctagctttatcagaatctgcattacctttcatttaatggaccctttgcaggttgcttcaaagtttacccttgttatgtgcagGATCCATCTATTAAGGAGATGGCAGATCAAATTGCAAGGGATCCTGCATTCAACCGGATGGCTGAGCAGCTACAGAGAAGTGCTCAAAGCACAGGAGAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - tgcttgc
- - - - - - - - - - - - - - - - - ctgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgct