Sequence
atgc intronic sequence ATGC exonic sequencegtacacatacttcactgagattttctcatttcccttcgatttgtctttcttcagTTTCAGTCACATGTATATCGAATCGAGCAGTGGACATGGGCGGCAACGATCCTGCAGAGCTCGAACGTGGCGTGGCAGTACGGCGTGAGCGGGCCTTTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AC202439.3_FGT006 (Zea mays), 3'ss of exon 2
lower sequence: PP1S409_42V6.1 (Physcomitrella patens), 3'ss of exon 2
---------------------------------------------------gtacacatacttcactgagattttctcatttcccttcgatttgtctttcttcagTTTCAGTCACATGTATATCGAATCGAGCAGTGGACATGGGCGGCAACGATCCTGCAGAGCTCGAACGTGGCGTGGCAGTACGGCGTGAGCGGGCCTTTCT------------------------------
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gtatggatcatgtgcacgaggaatcgaatgtgtaattgtgcctttgcagtctagcagttctcaaattgcaactgtgttgtaatgaattttcgtgattctccgttgtgatggtggcctggggtggatgtggtgcagTGGACATGGGCTGCAACCATTTTACAGAGCTCCAACGTGGCGTGGCAGTACGGAGTTAGTGGGCCTTTCTGGTACGCTAGTGGCGCCACTGTGCAGGTGC
upper sequence: AC202439.3_FGT006 (Zea mays), 3'ss of exon 2
lower sequence: PP1S257_108V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------------------gtacacatacttcactgagattttctcatttcccttcgatttgtctttcttcagTTTCAGTCACATGTATATCGAATCGAGCAGTGGACATGGGCGGCAACGATCCTGCAGAGCTCGAACGTGGCGTGGCAGTACGGCGTGAGCGGGCCTTTCT------------------------------
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gtaggccaaagtttcgcaacattagtcggtattaacttcaaaatcgttgacgaggattcagaagttttagaaacgttggctgacagacatgaccctggttgtggttg-tttcgcagTGGACATGGGCTGCAACGATTCTCCAGAGTTCCAATGTGGCCTGGCAGTATGGAGTAAGCGGTCCCTTCTGGTATGCAAGTGGCGCCACCGTGCAGGTGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtacacatacttcactgagattttctcatttcccttcgatttgtctttcttcagTTTCAGTCACATGTATATCGAATCGAGCAGTGGACATGGGCGGCAACGATCCTGCAGAGCTCGAACGTGGCGTGGCAGTACGGCGTGAGCGGGCCTTTCT
ttttctcatttccctt CT-rich tract
agatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacacatacttcactgagattttctcatttcccttcgatttgtctttcttcagTTTCAGTCACATGTATATCGAATCGAGCAGTGGACATGGGCGGCAACGATCCTGCAGAGCTCGAACGTGGCGTGGCAGTACGGCGTGAGCGGGCCTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT