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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgagttctctcaatttcaaagcattggtgcgatcgcgtttccatttacttcttaaacttcttctattgtttgtttcagGTGAATCTCTTAGAGTGGCTTAAAATGATGGTTACCAATAAGAGGGCAGATGAGGTAGTGCATCCAAACCTCGAGGTTAAGCCACCAAAATGTGCCCTTA

Basic information

species Zea mays
transcript AC199572.3_FGT001
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC199572.3_FGT001 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g47470.1 (Oryza sativa), 3'ss of exon 6
gtacgag-ttctctcaatttcaaagcattggtgcgatcgcgtttccatttacttcttaaacttcttctattgtttgtttcagGTGAATCTCTTAGAGTGGCTTAAAATGATGGTTACCAATAAGAGGGCAGATGAGGTAGTGCATCCAAACCTCGAGGTTAAGCCACCAAAATGTGCCCTTA
|||  || || ||  | |||   |  ||| |   || |    |  ||| || | || ||     || | |   |  ||||||   |||||  |||| ||||||||||||||| | | ||  |||||||| || || |||||| |||||||||| ||| ||||||| |||||| |||||||||
gtagaagcttttcctatttttcgacaatttgaatgaccagtctatcatctagtactcaagtcatttttttatgtcatttcagACAAATCTGGTAGAATGGCTTAAAATGATGATCAGCAGCAAGAGGGCGGAGGAAGTAGTGGATCCAAACCTTGAGATTAAGCCCCCAAAACGTGCCCTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgcgatcgcgtttccatttacttcttaaacttcttctattgtttgtttcagGTGAATCTCTTAGAGTGGCTTAAAATGATGGTTACCAATAAGAGGGCAGATGAGGTAGTGCATCCAAACCTCGAGGTTAAGCCACCAAAATGTGCCCTTA
                                 cttcttctattgttt  CT-rich tract
                   atttacttcttaaa  TA-rich tract