1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaccatttccccccttttccccttttctgtgtgcctgaactgcagattaatttagttgtctccattttttgatgtgaattgcggtgtgtgggcgtctccgtgcagTTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTGATGTGCGATCAGGCATTCTGTGCAGCCACCTTTGGCGGAAAGCTGCCGA
species | Zea mays |
transcript | AC190609.3_FGT004 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGTCAACTGCATCACCTGCGAGCAATGCCCCCACAAGAGCGGGCTCGGG TTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTGEST: gi|76021072|gb|DT948242.1|DT948242
genomic: GGGTCAACTGCATCACCTGCGAGCAATGCCCCCACAAGAGCGGGCTCGGGgtaccatttc ... ctccgtgcagTTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTG
EST: GGGTCAACTGCATCACCTGCGAGCAATGCCCCCACAAGAGCGGGCTCGGG TTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTGEST: gi|91874605|gb|EB404562.1|EB404562
genomic: GGGTCAACTGCATCACCTGCGAGCAATGCCCCCACAAGAGCGGGCTCGGGgtaccatttc ... ctccgtgcagTTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTG
EST: GGGTCAACTGCATCACCTGCGAGCAATGCCCCCACAAGAGCGGGCTCGGG TTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTGEST: gi|31360897|gb|CD445254.1|CD445254
genomic: GGGTCAACTGCATCACCTGCGAGCAATGCCCCCACAAGAGCGGGCTCGGGgtaccatttc ... ctccgtgcagTTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTG
EST: GGGTCAACTGCATCACCTGCGAGCAATGCCCCCACAAGAGCGGGCTCGGG TTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTGEST: gi|71767997|gb|DR965934.1|DR965934
genomic: GGGTCAACTGCATCACCTGCGAGCAATGCCCCCACAAGAGCGGGCTCGGGgtaccatttc ... ctccgtgcagTTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTG
EST: GGGTCAACTGCATCACCTGCGAGCAATGCCCCCACAAGAGCGGGCTCGGG TTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTG
genomic: GGGTCAACTGCATCACCTGCGAGCAATGCCCCCACAAGAGCGGGCTCGGGgtaccatttc ... ctccgtgcagTTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTG
tttagttgtctccattttttgatgtgaattgcggtgtgtgggcgtctccgtgcagTTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTGATGTGCGATCAGGCATTCTGTGCAGCCACCTTTGGCGGAAAGCTGCCGA
ttttgat putative branch site (score: 13)
cgtctcc putative PPT
attttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccatttccccccttttccccttttctgtgtgcctgaactgcagattaatttagttgtctccattttttgatgtgaattgcggtgtgtgggcgtctccgtgcagTTAGACTTGACGCTTTACGACCCCAAGGCATCCTCGACCGGGAGCATGGTGATGTGCGATCAGGCATTCTGTGCAGCCACCTTTGGCGGAAAGCTGCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC