1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cctttccttcgatcgtacgccgaaagcagtcaaagcacttgctcgaagcgaataaacatgggtttgagtgacagagagagttttgtttgtgaacgtgcagGGACACAGCTGGGCAGGAGAGGTTCCGCAGCCTGATCCCGAGCTACATCAGAGACTCCTCCGTAGCCGTCATCGTTTACGATGTGACCG
species | Zea mays |
transcript | AC166636.1_FGT008 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGTCCAAGACGATGTACCTCGAGGACCGCACCGTTCGCCTTCAGCTCTG GGACACAGCTGGGGCAGGEST: gi|149109537|gb|EE190253.2|EE190253
genomic: CTGTCCAAGACGATGTACCTCGAGGACCGCACCGTTCGCCTTCAGCTCTGgtatgcatat ... gaacgtgcagGGACACAGCTGGG-CAGG
EST: CTGTCCAAGACGATGTACCTCGAGGACCGCACCGTTCGCCTTCAGCTCTG GGACACAGCTGGGCAGGAGAGGTTCCGCAGCCTGATCCCGAGCTACATCAG
genomic: CTGTCCAAGACGATGTACCTCGAGGACCGCACCGTTCGCCTTCAGCTCTGgtatgcatat ... gaacgtgcagGGACACAGCTGGGCAGGAGAGGTTCCGCAGCCTGATCCCGAGCTACATCAG
aagcgaataaacatgggtttgagtgacagagagagttttgtttgtgaacgtgcagGGACACAGCTGGGCAGGAGAGGTTCCGCAGCCTGATCCCGAGCTACATCAGAGACTCCTCCGTAGCCGTCATCGTTTACGATGTGACCG
aataaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctttccttcgatcgtacgccgaaagcagtcaaagcacttgctcgaagcgaataaacatgggtttgagtgacagagagagttttgtttgtgaacgtgcagGGACACAGCTGGGCAGGAGAGGTTCCGCAGCCTGATCCCGAGCTACATCAGAGACTCCTCCGTAGCCGTCATCGTTTACGATGTGACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - -gcagtca
- - - - - - - - - - - - - - - - - -cacttgc
- - - - - - - - - - - - - - - - - - - - - - - - -gaataaa