1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttttttcccctgtttctgataatggccctaacactgttagttgctgccttggcagcaggggcaactgtttcactgttcgagtgctctatgaattttttttttgcactattttgcagCCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTCATGGGATTATTTTAG
species | Zea mays |
transcript | AC149818.2_FGT001 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTTCTCAGTGTGGGTGGGAAGAAACTAAAACTGACAATATGGGACACTG CCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTCEST: gi|71435756|gb|DR816806.1|DR816806
genomic: TTTTCTCAGTGTGGGTGGGAAGAAACTAAAACTGACAATATGGGACACTGgtaagttttt ... tattttgcagCCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTC
EST: TTTTCTCAGTGTGGGTGGGAAGAAACTAAAACTGACAATATGGGACACTG CCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTCEST: gi|211356336|gb|FL310955.1|FL310955
genomic: TTTTCTCAGTGTGGGTGGGAAGAAACTAAAACTGACAATATGGGACACTGgtaagttttt ... tattttgcagCCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTC
EST: ATTTCTCAGTGTGGGTGGGAAGAAACTAAAACTGACAATATGGGACACTG CCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTCEST: gi|38229757|gb|CF920070.1|CF920070
genomic: TTTTCTCAGTGTGGGTGGGAAGAAACTAAAACTGACAATATGGGACACTGgtaagttttt ... tattttgcagCCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTC
EST: TTTTGTCAGTGTGGGTGGGAAGAAACTAAAACTGACAATATGGGACACTG CCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTCEST: gi|6095558|gb|AW120225.1|AW120225
genomic: TTTTCTCAGTGTGGGTGGGAAGAAACTAAAACTGACAATATGGGACACTGgtaagttttt ... tattttgcagCCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTC
EST: TTTTCTCAGTGTGGGTGGGAAGAAACTAAAACTGACAATATGGGACACTG CCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTC
genomic: TTTTCTCAGTGTGGGTGGGAAGAAACTAAAACTGACAATATGGGACACTGgtaagttttt ... tattttgcagCCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTC
caactgtttcactgttcgagtgctctatgaattttttttttgcactattttgcagCCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTCATGGGATTATTTTAG
ttttttttttgcact CT-rich tract
aattttttttttgcac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttttcccctgtttctgataatggccctaacactgttagttgctgccttggcagcaggggcaactgtttcactgttcgagtgctctatgaattttttttttgcactattttgcagCCGGTCAAGAGAGGTTCAGGACAATTACCAGCTCTTACTACAGGGGTGCTCATGGGATTATTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC