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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtacagtatcctggagagtttgtggtgacattcccaagggcataccacattgggtttagtcatggttagttatgccattgaactaatgatgcctttttggcacagCTTTATTGAATTGATTGTGATGTGCTATTTGTTAACTATGTTTATTCCAGCTTTGCTAGATTTTCACCTTCATG

Basic information

species Zea mays
transcript AC149475.2_FGT005
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC149475.2_FGT005 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g05680.1 (Oryza sativa), 3'ss of exon 2
gttagtacagtatcctggagagtttgtggtgacattcccaag-ggcataccacattgggtttagtcatggttagttatgccattgaactaatgatgcctttttggcacagCTTTATTGAATTGATTGTGATGTGCT-ATTTGTTAACTATGTTTATTCCAGCTTTGCTAGATTTTCACCTTCATG
||  |  | |      | | |  || ||    | |   |||     | ||||   |   || | | |||  | |  |||| |||| | |   |||   |     |||      |  ||| ||  | ||||  | |  |   | | || ||||    |  |||  ||                   
gtgtgccctgctgtaggtacaagttctgaaaccgtcagcaatcaatacaccaatcttaattaatttatgtgttgacatgc-attgtatttcagATTGGT-----GCAATATCCTGGTGAGTTTGTGGTGACATTCCCAAGGGCTTACCATGTCGGGTTTAGCCATG-------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggtttagtcatggttagttatgccattgaactaatgatgcctttttggcacagCTTTATTGAATTGATTGTGATGTGCTATTTGTTAACTATGTTTATTCCAGCTTTGCTAGATTTTCACCTTCATG
                              aactaat  putative branch site (score: 2)
                                       tgccttttt  putative PPT
               ttagttat  TA-rich tract