1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtaaacaccttctgacctgacagtgctaaaatctatactatgttttttataatggaagaatgtctctactactttgatcccttcttattcaagtaatgttgacacattttatttcatttcagTGATTTGTCTTACAACCACCTCAGTGGCCTGATTCCTCAAGAGGTTGGGATGCTACAAAATTTGATACTGTT
species | Zea mays |
transcript | GRMZM2G463904_T03 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGAT TGATTTGTCTTAEST: gi|211374959|gb|FL429401.1|FL429401
genomic: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGATgtaaacacct ... ttcatttcagTGATTTGTCTTA
EST: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGAT TGATTTGTCTTACAAGCACCTCAGTGGCCTGATTCCTCAAGAEST: gi|71447930|gb|DR828980.1|DR828980
genomic: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGATgtaaacacct ... ttcatttcagTGATTTGTCTTACAACCACCTCAGTGGCCTGATTCCTCAAGA
EST: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGAT TGATTTGTCTTACAACCCCCTCAGTGGGCTGATTCCTCCAGAGGTTGGGATEST: gi|71447931|gb|DR828981.1|DR828981
genomic: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGATgtaaacacct ... ttcatttcagTGATTTGTCTTACAACCACCTCAGTGGCCTGATTCCTCAAGAGGTTGGGAT
EST: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGAT TGATTTGTCTTACAACCAEST: gi|211131186|gb|FL407402.1|FL407402
genomic: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGATgtaaacacct ... ttcatttcagTGATTTGTCTTACAACCA
EST: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGAT TGATTTGTCTTACAAGCACCTCAGTGGCCTGATTCCTEST: gi|101392872|gb|EB818367.1|EB818367
genomic: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGATgtaaacacct ... ttcatttcagTGATTTGTCTTACAACCACCTCAGTGGCCTGATTCCT
EST: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGAT TGATTTGTCTTACAACCACCTCAGTGGCCTGATTCCTCAAGAGGTTGGGAT
genomic: GCTGGACACATTCCTGCTGAATTTGGGAACTTAAGGAGCATCATGGAGATgtaaacacct ... ttcatttcagTGATTTGTCTTACAACCACCTCAGTGGCCTGATTCCTCAAGAGGTTGGGAT
actactttgatcccttcttattcaagtaatgttgacacattttatttcatttcagTGATTTGTCTTACAACCACCTCAGTGGCCTGATTCCTCAAGAGGTTGGGATGCTACAAAATTTGATACTGTT
tgttgac putative branch site (score: 31)
ttttatttcatttc putative PPT
acattttatttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacaccttctgacctgacagtgctaaaatctatactatgttttttataatggaagaatgtctctactactttgatcccttcttattcaagtaatgttgacacattttatttcatttcagTGATTTGTCTTACAACCACCTCAGTGGCCTGATTCCTCAAGAGGTTGGGATGCTACAAAATTTGATACTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG