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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttttcacagttctttaattcttccgttcagaagtcttggcaccacttggttccaacactagcttttcacctcacgtttcttctgcaccatgcagACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATACTCCCTGGATTCTGATGCGATTGGTCTGCCAAGGGCCCATGGGCTTTCTT

Basic information

species Zea mays
transcript GRMZM2G129155_T02
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211024339|gb|FL478389.1|FL478389
EST:     AGAGGAAGCAGATACGTGAAAATCTCAAGGTCCTTCAACAAGCTTACAAA                         ACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATAC
genomic: AGAGGAAGCAGATACGTGAAAATCTCAAGGTCCTTCAACAAGCTTACAAAgtacgttttc ... caccatgcagACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATAC
EST: gi|32828402|gb|CD968080.1|CD968080
EST:     AGAGGAAGCAGATACGTGAAAATCTCAAGGTCCTTCAACAAGCTTACAAA                         ACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATAC
genomic: AGAGGAAGCAGATACGTGAAAATCTCAAGGTCCTTCAACAAGCTTACAAAgtacgttttc ... caccatgcagACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATAC
EST: gi|33100316|gb|CF060276.1|CF060276
EST:     TCTCAAGGTCCTTCAACAAGCTTACAAA                         ACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATAC
genomic: TCTCAAGGTCCTTCAACAAGCTTACAAAgtacgttttc ... caccatgcagACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATAC
EST: gi|88758145|gb|DY542286.1|DY542286
EST:     AGAGGAAGCAGATACGTGAAAATCTCAAGGTCCTTCAACAAGCTTACAAA                         ACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATAC
genomic: AGAGGAAGCAGATACGTGAAAATCTCAAGGTCCTTCAACAAGCTTACAAAgtacgttttc ... caccatgcagACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATAC
EST: gi|33097482|gb|CF057442.1|CF057442
EST:     AGAGGAAGCAGATACGTGAAAATCTCAAGGTCCTTCAACAAGCTTACAAA                         ACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATAC
genomic: AGAGGAAGCAGATACGTGAAAATCTCAAGGTCCTTCAACAAGCTTACAAAgtacgttttc ... caccatgcagACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccacttggttccaacactagcttttcacctcacgtttcttctgcaccatgcagACTTTGGACGAGATACCACTTGACGCAGAGGCAGTAGAGAGGGGTGGATACTCCCTGGATTCTGATGCGATTGGTCTGCCAAGGGCCCATGGGCTTTCTT
                            acctcac  putative branch site (score: 3)
                                    tttcttctgc  CT-rich tract