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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtcacgtttctcgctgattttttttagacatgcttatttgcaatgcgtcgatgacgagtcaggaacttcggtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTTGTAGTTGTAGCAGTATTACTACGTAGTGTCATGGCAGGTTGACTGTATC

Basic information

species Zea mays
transcript GRMZM2G104377_T03
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104377_T03 (Zea mays), 3'ss of exon 19
lower sequence: LOC_Os05g01060.1 (Oryza sativa), 3'ss of exon 20
----------gtacagtcacgtt--tctcgctgattttttttagacatgcttatt-tgcaatgcgtcgatgacgagtcaggaacttcggtgatt--gcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTTGTAGTTG-TAGCAGTATTACTACGTAGTGTCATGGCAGGTTGACTGTATC--
          | | | |||| ||  | | ||   | || | | || |   | ||  ||   ||     || |  |   ||||| | |||   ||  |||||| ||||||||||| || |||| ||| |||||||| |||||||||||| |||| | || | ||||| ||   |     |  |||||   |||   ||| ||  
aaggggattgggaaattcactttggttttgcatctcttctatggagagattaataatgtgctgtcgttataataaaataggaaatgcgggtgttttgcagGCAGTTGAGAAGAGTAAAGGAAGAAGGAAGGGCATATTCTTCAAGTAGATTGTTGCTGCTGGCAGT-TTGTAATTGGATTCCATGGT--GTTTGTTGTTTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78021163|gb|DV489550.1|DV489550
EST:     ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG                         GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: gi|211344263|gb|FL079002.1|FL079002
EST:     CCATTGTTCTAATACTAAGGCTATTCAGGATGAAG                         GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
genomic: CCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: gi|17921450|gb|BM259101.1|BM259101
EST:     ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG                         GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: gi|5714191|gb|AI944176.1|AI944176
EST:     ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG                         GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: gi|60351693|gb|DN218666.1|DN218666
EST:     ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG                         GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: gi|60355764|gb|DN222737.1|DN222737
EST:     ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG                         GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: gi|17921770|gb|BM259421.1|BM259421
EST:     ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG                         GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
EST: gi|116820813|gb|EC864069.1|EC864069
EST:     ACCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAG                         GCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT
genomic: ATCACGAGATGCCATTGTTCTAATACTAAGGCTATTCAGGATGAAGgtacagtcac ... gtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacatgcttatttgcaatgcgtcgatgacgagtcaggaacttcggtgattgcagGCTGTTGAGAAGAGCAAGGGAAAAAGAAAGGGCATCTTCTTCAAGTAGTTTGTAGTTGTAGCAGTATTACTACGTAGTGTCATGGCAGGTTGACTGTATC
        ttattt  TA-rich tract