1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...gactctgtctgtaatcacctataatgctacgtttttttttcgttcacaaaaaaaaattgctacatctttgtgacacggtggtggttgattctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACGCACTGTTTGGGCCGGACAATGCTGCCGGTGAGACGGTCGATGACGGTT
species | Zea mays |
transcript | GRMZM2G096389_T02 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAG ACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACEST: gi|211368014|gb|FL470445.1|FL470445
genomic: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAGgtatgcctgt ... ctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGAC
EST: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAG ACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACEST: gi|211370660|gb|FL470448.1|FL470448
genomic: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAGgtatgcctgt ... ctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGAC
EST: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAG ACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACEST: gi|211368015|gb|FL470446.1|FL470446
genomic: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAGgtatgcctgt ... ctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGAC
EST: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAG ACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACEST: gi|29544081|gb|CB604461.1|CB604461
genomic: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAGgtatgcctgt ... ctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGAC
EST: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAG ACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACEST: gi|76018788|gb|DT945958.1|DT945958
genomic: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAGgtatgcctgt ... ctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGAC
EST: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAG ACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACEST: gi|78120367|gb|DV538751.1|DV538751
genomic: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAGgtatgcctgt ... ctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGAC
EST: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAG ACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACEST: gi|60396686|gb|DN229553.1|DN229553
genomic: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAGgtatgcctgt ... ctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGAC
EST: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAG ACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACEST: gi|211370659|gb|FL470447.1|FL470447
genomic: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAGgtatgcctgt ... ctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGAC
EST: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAG ACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACEST: gi|32915231|gb|CF020043.1|CF020043
genomic: GGACTTGGTTCAAAGATCAATGTGGGAGCTGTTGACGAATTGTACAAGgtatgcctgt ... ctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGAC
EST: GGAGCTGTTGACGAATTGTACAAG ACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGAC
genomic: GGAGCTGTTGACGAATTGTACAAGgtatgcctgt ... ctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGAC
acaaaaaaaaattgctacatctttgtgacacggtggtggttgattctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACGCACTGTTTGGGCCGGACAATGCTGCCGGTGAGACGGTCGATGACGGTT
ggttgat putative branch site (score: 47)
aaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactctgtctgtaatcacctataatgctacgtttttttttcgttcacaaaaaaaaattgctacatctttgtgacacggtggtggttgattctgtgagcagACTAAAGATGAAGTTGGCAGCGCAAACAATGAAGAAGAGATGGAGTTCGACGCACTGTTTGGGCCGGACAATGCTGCCGGTGAGACGGTCGATGACGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - ctgtctg
- - - - - - - - - - - -atgctac
- - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggtg