1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtactggacttccaagtttggagtttgatttcttgttcgcgaaggatcggattcgaatttgtgtaggttgtaacattgctctatggcttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTGAGCCCACTGTTGCATCCGGCAAACAG
species | Zea mays |
transcript | GRMZM2G081682_T01 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|32908733|gb|CF013546.1|CF013546
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|5762062|gb|AI967110.1|AI967110
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|24764290|gb|CA399456.1|CA399456
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|5739589|gb|AI947384.1|AI947384
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|211046951|gb|FL455967.1|FL455967
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGATATCGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|6095640|gb|AW120307.1|AW120307
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|4688570|gb|AI637240.1|AI637240
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|26559536|gb|CA831771.1|CA831771
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|9794851|gb|BE553159.1|BE553159
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|32916469|gb|CF021281.1|CF021281
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|60347665|gb|DN214638.1|DN214638
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|87155905|gb|DY400694.1|DY400694
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|211046948|gb|FL455964.1|FL455964
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGATATCGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|7145170|gb|AW506651.1|AW506651
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|21389890|gb|BQ527939.1|BQ527939
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|211046950|gb|FL455966.1|FL455966
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGATATCGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|32866939|gb|CF006621.1|CF006621
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|74232803|gb|DT640717.1|DT640717
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|60358930|gb|DN225903.1|DN225903
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|22715090|gb|BU197572.1|BU197572
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|22715088|gb|BU197571.1|BU197571
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTCCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|60398484|gb|DN231300.1|DN231300
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|211313620|gb|FL416741.1|FL416741
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGEST: gi|32909378|gb|CF014190.1|CF014190
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTG
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|31250143|gb|CD219167.1|CD219167
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|21331635|gb|BQ487016.1|BQ487016
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|76014001|gb|DT941171.1|DT941171
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|5804468|gb|AI979438.1|AI979438
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGCCTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTEST: gi|74237144|gb|DT645058.1|DT645058
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
EST: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAG GCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
genomic: TCCGCAAGCGGTACCAGAGCTTTGATAGTGAGATTGGTGCCTTGATCGAGgtactggact ... cttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGT
aaggatcggattcgaatttgtgtaggttgtaacattgctctatggcttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTGAGCCCACTGTTGCATCCGGCAAACAG
ttgtaac putative branch site (score: 2)
aatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactggacttccaagtttggagtttgatttcttgttcgcgaaggatcggattcgaatttgtgtaggttgtaacattgctctatggcttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTGAGCCCACTGTTGCATCCGGCAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG