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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcctgccttgctagtctccagagttctgaagttttgatagactgttcacatcagttgtgcttatattctctttgaaaaaaactgaattgcacagacagcaaaattttatatccattgtctcatctcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAACAGTCGGAGTAGTAGCCTTGGTGAAAGCCAATGGGAAACAGTTTTGCTC

Basic information

species Zea mays
transcript GRMZM2G047894_T01
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047894_T02 (Zea mays), 3'ss of exon 19
lower sequence: LOC_Os03g18080.2 (Oryza sativa), 3'ss of exon 19
gtctgcctgccttgctagtctccagagttctgaagttttgatagactgttcacatcagttgtgcttatattctctttgaaaaaaactgaattgcacagacagcaaaattttatatccattgtctcatctcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAACAGTCGGAGTAGTAGCCTTGGTGAAAGCCAATGGGAAACAGTTTTGCTC
                                               ||   | ||  | || ||| | ||| |||   ||    | | | ||    ||  |     ||||| ||   |  |||||||| | | |||||||||||||| || || ||||| ||| ||||||||||||||||||| || || |  ||||| ||||||||||||||||| |||||||| |||||||||||
-----------------------------------------------gtgtgcctcc-tcgtacttgttttcacttaagaagttcccgtagtgt---gatggattgtttttacatttgtgatctcatctaaccagcagTTGGACGGAATGCACAACACTTCATCACCTCCATTATCTGTGCGGGTTTGACGGCTGGAGTGGTAGCCTTGGTGAAAGCAAATGGGAAGCAGTTTTGCTC

upper sequence: GRMZM2G047894_T02 (Zea mays), 3'ss of exon 19
lower sequence: LOC_Os03g18080.1 (Oryza sativa), 3'ss of exon 19
gtctgcctgccttgctagtctccagagttctgaagttttgatagactgttcacatcagttgtgcttatattctctttgaaaaaaactgaattgcacagacagcaaaattttatatccattgtctcatctcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAACAGTCGGAGTAGTAGCCTTGGTGAAAGCCAATGGGAAACAGTTTTGCTC
                                               ||   | ||  | || ||| | ||| |||   ||    | | | ||    ||  |     ||||| ||   |  |||||||| | | |||||||||||||| || || ||||| ||| ||||||||||||||||||| || || |  ||||| ||||||||||||||||| |||||||| ||||||||   
-----------------------------------------------gtgtgcctcc-tcgtacttgttttcacttaagaagttcccgtagtgt---gatggattgtttttacatttgtgatctcatctaaccagCAGTTGGACGGAATGCACAACACTTCATCACCTCCATTATCTGTGCGGGTTTGACGGCTGGAGTGGTAGCCTTGGTGAAAGCAAATGGGAAGCAGTTTTG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31348859|gb|CD433216.1|CD433216
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|78021557|gb|DV489944.1|DV489944
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|71428422|gb|DR809472.1|DR809472
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTTTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|78022411|gb|DV490798.1|DV490798
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|32934739|gb|CF039551.1|CF039551
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|37387638|gb|CF631017.1|CF631017
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|37391643|gb|CF633065.1|CF633065
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|71325384|gb|DR799369.1|DR799369
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTTTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|18385140|gb|BM418339.1|BM418339
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|17970259|gb|BM277022.1|BM277022
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|24763373|gb|CA398549.1|CA398549
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|12968368|gb|BG265314.1|BG265314
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|113702249|gb|EE679753.1|EE679753
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
EST: gi|32850672|gb|CD990353.1|CD990353
EST:     AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAG                         TTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA
genomic: AGCAATCATAGTTGGTGGGATTACCGCGACAACTTTCACTCTCAGTCAAGgtctgcctgc ... tcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgaattgcacagacagcaaaattttatatccattgtctcatctcatctgcagTTGGACGGAACGCGCAGCACTTGATCTCCTCCATTATCTGTGCGGGCTTAACAGTCGGAGTAGTAGCCTTGGTGAAAGCCAATGGGAAACAGTTTTGCTC
                                      tctcatctc  CT-rich tract
                    aaaattttatatccat  TA-rich tract