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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttcttgctttcttcatctttggtcgccagtgccggacttacaaatctaaaagagttggtgtattctattgcagGGAAGATGCAACCACTCTCGGTATGGTTATTGGAGCAATGTACACTGCTGTTATGTTTATCGGCATCAACAATTGTTCAACTGTGCAGCCAGTTGTTTCA

Basic information

species Zea mays
transcript GRMZM2G029506_T01
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029506_T01 (Zea mays), 3'ss of exon 19
lower sequence: LOC_Os06g36090.2 (Oryza sativa), 3'ss of exon 15
gtaaat-tttcttgctttcttcatctttgg-tcgccagtgccggacttacaa-atctaaaagagttggtgtattctattgcagGGAAGATGCAACCACTCTCGGTATGGTTATTGGAGCAATGTACACTGCTGTTATGTTTATCGGCATCAACAATTGTTCAACTGTGCAGCCAGTTGTTTCA
||||||  ||| |   || ||||||||||  ||   | |       || ||  |||| |     ||||||| || |  | ||||| | |||| |   ||||  | ||||| |||||||||||||| || || || ||||||||||| |||||||||||| | |||||||||||| | || || 
gtaaatacttcctctctttttcatctttgactccttaatcttaatgttccagtatctgacgtttttggtgtcttatgat-cagGGGAAATGCCAATTCTCTTAGAATGGTCATTGGAGCAATGTATACAGCAGTGATGTTTATCGGTATCAACAATTGTGCGACTGTGCAGCCAATCGTGTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120481344|gb|EH211263.1|EH211263
EST:     TTAGTTGCCTTGCTTCTCGGCTCCATTTTCTGGAGGATAGGCACCAACAT                         GGAAGATGCAACCACTCTCGGTATGGTTATTGGAGCAATGTACACTGCTGT
genomic: TTAGTTGCCTTGCTTCTCGGCTCCATTTTCTGGAGGATAGGCACCAACATgtaaattttc ... tctattgcagGGAAGATGCAACCACTCTCGGTATGGTTATTGGAGCAATGTACACTGCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtcgccagtgccggacttacaaatctaaaagagttggtgtattctattgcagGGAAGATGCAACCACTCTCGGTATGGTTATTGGAGCAATGTACACTGCTGTTATGTTTATCGGCATCAACAATTGTTCAACTGTGCAGCCAGTTGTTTCA
                                            ttctatt  CT-rich tract
                   ttacaaatctaaaa  TA-rich tract