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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttggattactggtcataacattggttgctgcctacttctgatatctatttattctcttgtagtctcatttacctttaataatgctcactatgagatcactgactcgcccttactactacaacagGGCTTCAGTTCTGGAATATCTAGTTCATCAGGTGCAGTGTCTAGGCTTGTTTTCTACACACTATCATAGGTTAGCAATGGAACACAACGATACCAAG

Basic information

species Zea mays
transcript GRMZM2G421541_T01
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421541_T01 (Zea mays), 3'ss of exon 18
lower sequence: LOC_Os09g24220.1 (Oryza sativa), 3'ss of exon 18
gtaagttggattact-ggtcataacattg-gttgctgcctacttctgatatctatttattctcttgtagtctcatttacctttaataatgctcactatgagatcactgactcgcccttactactacaacagGGCTTCAGTTCTGGAATATCTAGTTCATCAGGTGCAGTGTCTAGGCTTGTTTTCTACACACTATCATAGGTTAGCAATGGAACACAACGATACCAAG
||| ||||  |||   | ||||| ||||| |||  |   ||||   |||||||  ||| |||  ||| |     |||          |||||| ||||||||  | | | |     |    | |    |||||| || ||||| ||||||||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||||||   ||| | || |||| ||||
gtatgttgatttaaaagatcatagcattgagttattatgtactaa-gatatctcattagtct--tgttgctgtgtttt---------atgctccctatgagaatattaattgagtttattaatttgctcagGGCATCTGTTCTAGAATATCTAGTTCATCATGTGCAGTGCCTAGGCTTATTTTCAACACACTACCATAGGTTAGCAGCAGAAAATAAGGATAGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105701|gb|DV524119.1|DV524119
EST:     TTAGATGAGCTTGGACGGGGTACATCAACTTCTGATGGACAAGCTATCGC                         GGCTTCAGTTCTGGAATATCTAGTTCATCAGGTGCAGTGTCTAGGCTTGTT
genomic: TTAGATGAGCTTGGACGGGGTACATCAACTTCTGATGGACAAGCTATCGCgtaagttgga ... actacaacagGGCTTCAGTTCTGGAATATCTAGTTCATCAGGTGCAGTGTCTAGGCTTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacctttaataatgctcactatgagatcactgactcgcccttactactacaacagGGCTTCAGTTCTGGAATATCTAGTTCATCAGGTGCAGTGTCTAGGCTTGTTTTCTACACACTATCATAGGTTAGCAATGGAACACAACGATACCAAG
     ttaataat  TA-rich tract