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...cgaggggtgaagtagacgacccttaaagttcaggtgttagacttattcccatatacaagtgtcaggccatcagtttttaactaacatattttcgatgcagCTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTGCCGGAGAGGGGAGACTTCGATATGAAGGAAGTCCTTGAGTCTACGTATT
species | Zea mays |
transcript | GRMZM2G381395_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAAT CTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTGEST: gi|91877942|gb|EB407899.1|EB407899
genomic: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAATgtatgtatct ... ttcgatgcagCTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTG
EST: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAAT CTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTGEST: gi|83279316|gb|DV943324.1|DV943324
genomic: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAATgtatgtatct ... ttcgatgcagCTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTG
EST: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAAT CTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTGEST: gi|6031435|gb|AW076337.1|AW076337
genomic: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAATgtatgtatct ... ttcgatgcagCTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTG
EST: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAAT CTGTTGGAGAGCTTTGAGAAATCTTTCCCTTAAATTAAAATTTCNNCCACCEST: gi|74240731|gb|DT648645.1|DT648645
genomic: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAATgtatgtatct ... ttcgatgcagCTGTTGGAGAGCTTTGAGAAATCTTTCCCT-AAATTAAAATT-C--CCACC
EST: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAAT CTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTGEST: gi|31354501|gb|CD438858.1|CD438858
genomic: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAATgtatgtatct ... ttcgatgcagCTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTG
EST: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAAT CTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTG
genomic: TACTCCGGGAAAAGTTTGTGGAACTCTATGATACACCTATTCTGGAAAATgtatgtatct ... ttcgatgcagCTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTG
ttcccatatacaagtgtcaggccatcagtttttaactaacatattttcgatgcagCTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTGCCGGAGAGGGGAGACTTCGATATGAAGGAAGTCCTTGAGTCTACGTATT
aactaac putative branch site (score: 83)
tattttc CT-rich tract
agtttttaactaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaggggtgaagtagacgacccttaaagttcaggtgttagacttattcccatatacaagtgtcaggccatcagtttttaactaacatattttcgatgcagCTGTTGGAGAGCTTTGAGAAATCTTTCCCTAAATTAAAATTCCCACCGTTGCCGGAGAGGGGAGACTTCGATATGAAGGAAGTCCTTGAGTCTACGTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccatca