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gcaagttctcccttatcttgtcagaggcctaagctaatcgtttttataatatccacctttctcattgcatttgcttgtatctttcacatcatgcagTCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAACGCTCATGACGGCATGGTTGCTGCCCTAGCCGCGTCAAGTGCATCGGGGC
species | Zea mays |
transcript | GRMZM2G361398_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAG TCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAACEST: gi|44900568|gb|CK827113.1|CK827113
genomic: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAGgcaagttctc ... catcatgcagTCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAAC
EST: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAG TCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAACEST: gi|83278224|gb|DV942232.1|DV942232
genomic: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAGgcaagttctc ... catcatgcagTCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAAC
EST: GTGTTTTTCACCCAAATTACCCGAATTTGCTTCCAATCGGTTGTTATGAG TCCCTAGAGTTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAACEST: gi|33091637|gb|CF051631.1|CF051631
genomic: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAGgcaagttctc ... catcatgcagTCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAAC
EST: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAG TCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAACEST: gi|83278911|gb|DV942919.1|DV942919
genomic: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAGgcaagttctc ... catcatgcagTCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAAC
EST: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAG TCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAACEST: gi|24766351|gb|CA401505.1|CA401505
genomic: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAGgcaagttctc ... catcatgcagTCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAAC
EST: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAG TCCCTAGAGCTTTGGGACATTAGGGAGAAGAACACGGTGACAATCAGCAACEST: gi|60351102|gb|DN218075.1|DN218075
genomic: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAGgcaagttctc ... catcatgcagTCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAAC
EST: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAG TCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAACEST: gi|78109474|gb|DV527890.1|DV527890
genomic: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAGgcaagttctc ... catcatgcagTCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAAC
EST: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAG TCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAAC
genomic: GTGTTTTTCACCCAAATTACCCGAATTTGCTTATAATCGGTTGTTATGAGgcaagttctc ... catcatgcagTCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAAC
ttttataatatccacctttctcattgcatttgcttgtatctttcacatcatgcagTCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAACGCTCATGACGGCATGGTTGCTGCCCTAGCCGCGTCAAGTGCATCGGGGC
tctttcac CT-rich tract
taatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagttctcccttatcttgtcagaggcctaagctaatcgtttttataatatccacctttctcattgcatttgcttgtatctttcacatcatgcagTCCCTAGAGCTTTGGGACATAAGGGAGAAGAACACGGTGACAATCAGCAACGCTCATGACGGCATGGTTGCTGCCCTAGCCGCGTCAAGTGCATCGGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC