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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatgctcgctgtgattatgtcatgtatagtgagttaatgataaatgtgtgctggtctgcaaagaactcatattggagcattctgcattctatggaaatgaaaaatgttttgtaacgttactccagaaattaccagaatgtatttgataaatcatgcagGGTGGTACCAGCTCTGGTTATAAGAAATATGTAGAAGAGAAGGGTCTGAAAGATGAAACATATTGTTCTGATGGCGTCGCTCTCATTCAAATTTCTGGAA

Basic information

species Zea mays
transcript GRMZM2G323479_T01
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G323479_T01 (Zea mays), 3'ss of exon 18
lower sequence: LOC_Os03g24220.1 (Oryza sativa), 3'ss of exon 13
-------gtatgatgctcgctgtgattatgtcatgtatagtgagttaatgataaatgtgtgctggtctgcaaagaactcatattggagcattctgcattctatggaaatgaaaaatgttttgtaacgttactccagaaattaccag---aatgtatttgataaatcatgcagGGTGGTACCAGCTCTGGTTATAAGAAATATGTAGAAGAGAAGGGTCTGAAAGATGAAACATATTGTTCTGATGGCGTCGCTCTCATTCAAATTTCTGGAA
          |||| ||  |  |  | |||| |  || |   ||||  | |||  || ||| |   ||  || |||||      || ||   |||   |||||  |  ||||   |  | |  ||  | | | || | | || |||   | ||||||||  | ||  |||||||||| | ||||||||| ||  |||||| ||||||||| |||||  |||| ||||||||||||| |   |||||| | |||||  ||| |||||||||||
gtatggtacttgatccttaccatattcatgttaaatagaagcagttggtaatag-tgggtgtt---ctctaaggaacta-----ggtgcgcactg---tctatatagctgaactgtaatgtccaatctcaattcaaacaatatcagttaagtgtatttggcatattgtgcagGGTGGAATCAGCTCTGGATACCAGAAATTTGTAGAAGAAAAGGGCTTGAAGGATGAAACATATTCTGGCGATGGCATTGCTCTTTTTCGAATTTCTGGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttttgtaacgttactccagaaattaccagaatgtatttgataaatcatgcagGGTGGTACCAGCTCTGGTTATAAGAAATATGTAGAAGAGAAGGGTCTGAAAGATGAAACATATTGTTCTGATGGCGTCGCTCTCATTCAAATTTCTGGAA
                                aatgtatttgataaat  TA-rich tract