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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacaattatccatatatctttcagctttggttagatatggtatgtgattgatcaaaagtataacatacattgtgtttttactatgaatacacgtctcctctgatattagttaaatgatttaaaaagatatattgcaagatttacaaccttttgttttgactctttgttcattcggtattttttttcagATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAACTTGCTCTTGCGCTGTATGGAATGACCTCTCTGCCAGAATTTCTTCCAG

Basic information

species Zea mays
transcript GRMZM2G305007_T02
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78023163|gb|DV491550.1|DV491550
EST:     GCCTGCTCCTACTTTTATCTAAGGTTTCTCAGAAGGAAAATCCATCTCCA                         ATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA
genomic: GCCTGCTCCTACTTTTATCTAAGGTTTCTCAGAAGGAAAATCCATCTCCAgtaagtacaa ... tttttttcagATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA
EST: gi|211147087|gb|FL480722.1|FL480722
EST:     GCCTGCTCCTACTTTTATCTAAGGTTTCTCAGAAGGAAAATCCATCTCCA                         ATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA
genomic: GCCTGCTCCTACTTTTATCTAAGGTTTCTCAGAAGGAAAATCCATCTCCAgtaagtacaa ... tttttttcagATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA
EST: gi|8383114|gb|BE055997.1|BE055997
EST:     AGAAGGAAAATCCATCTCCA                         ATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA
genomic: AGAAGGAAAATCCATCTCCAgtaagtacaa ... tttttttcagATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA
EST: gi|6020457|gb|AW065385.1|AW065385
EST:     GCCTGCTCCTACTTTTATCTAAGGTTTCTCAGAAGGAAAATCCATCTCCA                         ATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA
genomic: GCCTGCTCCTACTTTTATCTAAGGTTTCTCAGAAGGAAAATCCATCTCCAgtaagtacaa ... tttttttcagATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA
EST: gi|5762187|gb|AI967235.1|AI967235
EST:     GCCTGCTCCTACTTTTATCTAAGGTTTCTCAGAAGGAAAATCCATCTCCA                         ATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA
genomic: GCCTGCTCCTACTTTTATCTAAGGTTTCTCAGAAGGAAAATCCATCTCCAgtaagtacaa ... tttttttcagATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA
EST: gi|71768064|gb|DR966001.1|DR966001
EST:     GCCTGCTCCTACTTTTATCTAAGGTTTCTCAGAAGGAAAATCCATCTCCA                         ATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA
genomic: GCCTGCTCCTACTTTTATCTAAGGTTTCTCAGAAGGAAAATCCATCTCCAgtaagtacaa ... tttttttcagATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaagatttacaaccttttgttttgactctttgttcattcggtattttttttcagATTCCTGAATATAACAGTGCCATAGAGAAGGAAGGTGGTAGCACGGATGAACTTGCTCTTGCGCTGTATGGAATGACCTCTCTGCCAGAATTTCTTCCAG
                    ttttgac  putative branch site (score: 3)
                                          tattttttttc  putative PPT
                                          tattttttttca  TA-rich tract