1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
gtacttgcatagttgcatggatctttgttgccttcatttgatttttattttctctgaaaagcatagcaaagagcaagataatgccttcattttctctctcttatgtaacagGCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTTGTCACATATGGTGGTCAGATTGGCTCTTCTTCGTATGAGACAATAATCG
species | Zea mays |
transcript | GRMZM2G168629_T04 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CGTGTGTCCTGGATCATGTTGNTTCTGAGCTCACAGCTTTCCTTCGCAAG GCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTTEST: gi|22489194|gb|BU049130.1|BU049130
genomic: CGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAGgtacttgcat ... tatgtaacagGCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTT
EST: CGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAG GCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTTEST: gi|211432450|gb|FL213954.1|FL213954
genomic: CGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAGgtacttgcat ... tatgtaacagGCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTT
EST: CGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAG GCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGNTEST: gi|32868683|gb|CF008365.1|CF008365
genomic: CGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAGgtacttgcat ... tatgtaacagGCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTT
EST: GTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAG GCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTTEST: gi|87298767|gb|DY470770.1|DY470770
genomic: GTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAGgtacttgcat ... tatgtaacagGCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTT
EST: CGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAG GCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTTEST: gi|32859371|gb|CD999052.1|CD999052
genomic: CGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAGgtacttgcat ... tatgtaacagGCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTT
EST: CGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAG GCCAACAGAGCTEST: gi|211432451|gb|FL213955.1|FL213955
genomic: CGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAGgtacttgcat ... tatgtaacagGCCAACAGAGCT
EST: CGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAG GCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTT
genomic: CGTGTGTCCTGGATCATGTTGTTTCTGAGCTCACAGCTTTCCTTCGCAAGgtacttgcat ... tatgtaacagGCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTT
aaaagcatagcaaagagcaagataatgccttcattttctctctcttatgtaacagGCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTTGTCACATATGGTGGTCAGATTGGCTCTTCTTCGTATGAGACAATAATCG
tgccttcattttctct CT-rich tract
aagataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgcatagttgcatggatctttgttgccttcatttgatttttattttctctgaaaagcatagcaaagagcaagataatgccttcattttctctctcttatgtaacagGCCAACAGAGCTCTTAGGCAGGCGACGTTGGGAACTCTAAATTCTTTGGTTGTCACATATGGTGGTCAGATTGGCTCTTCTTCGTATGAGACAATAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG