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gtaagttctagattaatacataattgtattgcatttctagctttcttttgtcgttttgctctactcaactaaatcatgatttattaaggatcatcatgtaatttcaggtccccttgtatattttggatgtgccaatataaatatttttccattaaaatacacaaactaacatctgaccatacatttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGTCTCAAGAAGTTCGTGGTTATGTCGAGGCTGTTTTGAATAGTCTGGCAG
species | Zea mays |
transcript | GRMZM2G157462_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGEST: gi|78180891|gb|DV551264.1|DV551264
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATG
EST: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGEST: gi|26455909|gb|CA827492.1|CA827492
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATG
EST: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGEST: gi|31355296|gb|CD439653.1|CD439653
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATG
EST: CAAGTACTGAGGGTAGTTCACTTAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTACATGGATGEST: gi|31353959|gb|CD438316.1|CD438316
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATG
EST: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGEST: gi|31357385|gb|CD441742.1|CD441742
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATG
EST: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGEST: gi|22491320|gb|BU051243.1|BU051243
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATG
EST: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGEST: gi|32940832|gb|CF045651.1|CF045651
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATG
EST: ACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGEST: gi|87151847|gb|DY396636.1|DY396636
genomic: ACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATG
EST: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGEST: gi|19437242|gb|BM953652.1|BM953652
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATG
EST: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTEST: gi|32857965|gb|CD997646.1|CD997646
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTT
EST: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTCTA GATACTATAGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGGTGGATGEST: gi|31354322|gb|CD438679.1|CD438679
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATG
EST: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACEST: gi|7031283|gb|AW461021.1|AW461021
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCAC
EST: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTA GATACTATGGCACG
genomic: CAAGTACTGAGGGTAGTTCAATGAGGCAAAGCAATTCGGATGGCGCTTTAgtaagttcta ... ttttcaaaagGATACTATGGCACG
aatatttttccattaaaatacacaaactaacatctgaccatacatttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGTCTCAAGAAGTTCGTGGTTATGTCGAGGCTGTTTTGAATAGTCTGGCAG
catttttc CT-rich tract
ttttccattaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctagattaatacataattgtattgcatttctagctttcttttgtcgttttgctctactcaactaaatcatgatttattaaggatcatcatgtaatttcaggtccccttgtatattttggatgtgccaatataaatatttttccattaaaatacacaaactaacatctgaccatacatttttcaaaagGATACTATGGCACGTAGACCTGCTGATCCTGAAGAAGAACTTAGATGGATGTCTCAAGAAGTTCGTGGTTATGTCGAGGCTGTTTTGAATAGTCTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT