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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactataaacttggtcatgtgtctggaatgctcaaatgaccctctattttttattacattatttttccatttccattaatctaacttgtgcattcatgacaacttctagAAACTTACCTTCATTTCGTTGAGTCAAGATGATGGCCAAAACCCGTCTAGGACAACTGTCCGAGCATCCTCTGGGGCGATTCTTGCTAGGCTTCTGGTGA

Basic information

species Zea mays
transcript GRMZM2G151905_T03
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151905_T05 (Zea mays), 3'ss of exon 18
lower sequence: LOC_Os07g49260.1 (Oryza sativa), 3'ss of exon 18
gtacta-taaacttggtcatgtgtctggaatgctcaaatgaccctctattttttattacattatttttccatttccattaatctaacttgtgcattcatgacaacttctagAAACTTACCTTCATTTCGTTGAGTCAAGATGATGGCCAAAACCCGTCTAGGACAACTGTCCGAGCATCCTCTGGGGCGATTCTTGCTAGGCTTCTGGTGA
|||||  ||   || ||      ||  ||||| ||| ||||  |  | | ||   || |||| |||| | |||| || || ||| |||||| || ||||| ||||||||||||||||| |||||| |  |||| |||||| ||||  || || || ||||||||||||||||| |||||  | || |||||||||||||| ||||||||||
gtacttctagggtttgttgaac-tccagaatgttcagatgattcaatgtattcccttccattgttttgc-attttcactattctgacttgtccactcatgtcaacttctagAAACTTATCTTCATATGTTTGAATCAAGACGATGAACATAATCCTTCTAGGACAACTGTCCGTGCATCTGCGGGAGCGATTCTTGCTAGACTTCTGGTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37361410|gb|CF602699.1|CF602699
EST:     ACCATTGATATCCAGTGCTCTTCAG                         AAACTTACCTTCATTTCGTTGAGTCAAGATGATGGCCAAAACCCGTCTAGG
genomic: ACCATTGATATCCAGTGCTCTTCAGgtactataaa ... caacttctagAAACTTACCTTCATTTCGTTGAGTCAAGATGATGGCCAAAACCCGTCTAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattatttttccatttccattaatctaacttgtgcattcatgacaacttctagAAACTTACCTTCATTTCGTTGAGTCAAGATGATGGCCAAAACCCGTCTAGGACAACTGTCCGAGCATCCTCTGGGGCGATTCTTGCTAGGCTTCTGGTGA
                        atctaac  putative branch site (score: 2)
                                                cttct  putative PPT
                    attaatctaa  TA-rich tract