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...acttgtcttatttctgttacttctagtatctttgatgttatttttaaaagagatatgcccttataagaattaaagcgtaacattcgataaatatttccagGTATGGTCAGTTTGACAGTGCAAAAGAAACTTTTGAGGTTATTACAGATCACGAGAGCATGCTGGATCTATTTATTTGTCACCTGAACCCAAGTGCATTG
species | Zea mays |
transcript | GRMZM2G150772_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ACTTCTCATCTGTTCCAGCGTTTCCGAGAATTGGGATATGCATGTATAAA GTATGGTCAGTTTGACAGTGCAAAAGAAACTTTTGAGGTTATTACAGATCAEST: gi|32839168|gb|CD978849.1|CD978849
genomic: ACTTCTCATCTGTTCCAGCGTTTCCGAGAATTGGGATATGCATGTATAAAgtatgttcac ... atatttccagGTATGGTCAGTTTGACAGTGCAAAAGAAACTTTTGAGGTTATTACAGATCA
EST: ACTTCTCATCTGTTCCAGCGTTTCCGAGAATTGGGATATGCATGTATAAA GTATGGTCAGTTTGACAGTGCAAAAGAAACTTTTGAGGTTATTACAGATCAEST: gi|32837707|gb|CD977385.1|CD977385
genomic: ACTTCTCATCTGTTCCAGCGTTTCCGAGAATTGGGATATGCATGTATAAAgtatgttcac ... atatttccagGTATGGTCAGTTTGACAGTGCAAAAGAAACTTTTGAGGTTATTACAGATCA
EST: ACTTCTCATCTGTTCCAGCGTTTCCGAGAATTGGGATATGCATGTATAAA GTATGGTCAGTTTGACAGTGCAAAAGAAACTTTTGAGGTTATTACAGATCAEST: gi|32838041|gb|CD977719.1|CD977719
genomic: ACTTCTCATCTGTTCCAGCGTTTCCGAGAATTGGGATATGCATGTATAAAgtatgttcac ... atatttccagGTATGGTCAGTTTGACAGTGCAAAAGAAACTTTTGAGGTTATTACAGATCA
EST: ACTTCTCATCTGTTCCAGCGTTTCCGAGAATTGGGATATGCATGTATAAA GTATGGTCAGTTTGACAGTGCAAAAGAAACTTTTGAGGTTATTACAGATCA
genomic: ACTTCTCATCTGTTCCAGCGTTTCCGAGAATTGGGATATGCATGTATAAAgtatgttcac ... atatttccagGTATGGTCAGTTTGACAGTGCAAAAGAAACTTTTGAGGTTATTACAGATCA
aaaagagatatgcccttataagaattaaagcgtaacattcgataaatatttccagGTATGGTCAGTTTGACAGTGCAAAAGAAACTTTTGAGGTTATTACAGATCACGAGAGCATGCTGGATCTATTTATTTGTCACCTGAACCCAAGTGCATTG
gcgtaac putative branch site (score: 3)
tatttcc putative PPT
ttataagaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgtcttatttctgttacttctagtatctttgatgttatttttaaaagagatatgcccttataagaattaaagcgtaacattcgataaatatttccagGTATGGTCAGTTTGACAGTGCAAAAGAAACTTTTGAGGTTATTACAGATCACGAGAGCATGCTGGATCTATTTATTTGTCACCTGAACCCAAGTGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA