1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gcataatcgatttcttttcttctccacattttcgagaaagtatttcttttttgaatttttctaatagtagttgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAGTTAGCTATGTCAAGTGGAAAG
species | Zea mays |
transcript | GRMZM2G141587_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAGEST: gi|18384433|gb|BM417632.1|BM417632
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG GCGATTGC-ACC-AGGTGCAA-GTGAGTCCA-GTGGAAGATATTAGGGGAGEST: gi|211291668|gb|FL235608.1|FL235608
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCAAAG GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAGEST: gi|22489660|gb|BU049570.1|BU049570
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG GCGATTGCTACCGAGGTGCAAAGTGAGTCCA-GTGGAAGATAEST: gi|18649807|gb|BM498626.1|BM498626
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATA
EST: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAGEST: gi|56382379|gb|CV985048.1|CV985048
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCAAAG GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAGEST: gi|89106141|gb|DY576358.1|DY576358
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAGEST: gi|60337474|gb|DN204447.1|DN204447
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAG GCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAGEST: gi|18649808|gb|BM498627.1|BM498627
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
EST: ATTACAGATTTGACCTGGCTGTGCACCTTGGTCGACTTGAAATTGCGAAG GCGATTGCT-CCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
genomic: ATTACAGATTTGACCTGGCTGTGCAACTTGGTCGACTTGAAATTGCGAAGgcataatcga ... tgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAG
cattttcgagaaagtatttcttttttgaatttttctaatagtagttgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAGTTAGCTATGTCAAGTGGAAAG
ttctaat putative branch site (score: 2)
ttgttct putative PPT
aaagtatttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcataatcgatttcttttcttctccacattttcgagaaagtatttcttttttgaatttttctaatagtagttgttctgcagGCGATTGCTACCGAGGTGCAAAGTGAGTCCAAGTGGAAGATATTAGGGGAGTTAGCTATGTCAAGTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA