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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtctaagggcgctattaaaaatcatccagagtactcgtcttttcaatcgacaacttgccatgttcgacaatttttcatccattctttttctttatacagGATGGGGGAGCAGCTGAACTTACTGGTTCGCCTACTGAAAAGGCCATTCTTTCTTGGGGCCTTAAG

Basic information

species Zea mays
transcript GRMZM2G132712_T01
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132712_T03 (Zea mays), 3'ss of exon 19
lower sequence: LOC_Os08g40530.2 (Oryza sativa), 3'ss of exon 3
---agtctaagggcgctattaaaaatcatccagagtactcgtcttt-tcaatcgacaacttgccatgttcgacaatttttcatccattctttttctttatacagGATGGGGGAGCAGCTGAACTTACTGGTTCGCCTACTGAAAAGGCCATTCTTTCTTGGGGCCTTAAG
     |||| ||    |||| | | || ||||    | | |  |   | | | |  |  ||  |  ||   |||||| |  | ||||| ||||||| | |  ||||||||||||  ||||||||| | || ||||| ||||||||||| |||||||||||||||||||||
acgtctctagggagaatattgatagtcctccatgaaatttggatacattagttgttatattctctagtc--acaattat--aaccattatttttctatctctagGATGGGGGAGATGCTGAACTTTCAGGATCGCCAACTGAAAAGGCTATTCTTTCTTGGGGCCTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443249|gb|DR824299.1|DR824299
EST:     TTATTGAAGGAATTGCGCAGAACACAACAGGAACTGTATTTCTGCCAGAG                         GATGGGGGAGCAGCTGAACTTACTGGTTCGCCTACTGAAAAGGCCATTCTT
genomic: TTATTGAAGGAATTGCGCAGAACACAACAGGAACTGTATTTCTGCCAGAGgtacagaaaa ... ctttatacagGATGGGGGAGCAGCTGAACTTACTGGTTCGCCTACTGAAAAGGCCATTCTT
EST: gi|31350151|gb|CD434508.1|CD434508
EST:     TTATTGAAGGAATTGCGCAGAACACAACAGGAACTGTATTTCTGCCAGAG                         GATGGGGGAGCAGCTGAACTTACTGGTTCGCCTACTGAAAAGGCCATTCTT
genomic: TTATTGAAGGAATTGCGCAGAACACAACAGGAACTGTATTTCTGCCAGAGgtacagaaaa ... ctttatacagGATGGGGGAGCAGCTGAACTTACTGGTTCGCCTACTGAAAAGGCCATTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcgacaacttgccatgttcgacaatttttcatccattctttttctttatacagGATGGGGGAGCAGCTGAACTTACTGGTTCGCCTACTGAAAAGGCCATTCTTTCTTGGGGCCTTAAG
                          tttttcatccattctt  CT-rich tract
                                    attctttttctttata  TA-rich tract