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gtgagaatacttatttgctcttatttagaacacaacctattacatgttaagcaaaagataatttatgcactatggctttacaactttgctccaaactcttaaatatattgcccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAAGAGGAAGCAGATACGTGAAAATCTCAAGGTCCTTCAACAAGCTTACAAA
species | Zea mays |
transcript | GRMZM2G129155_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAG AGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAAEST: gi|32847928|gb|CD987609.1|CD987609
genomic: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatac ... cccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
EST: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAG AGATGATCTTTTGGAAGACTTGCT-AAAGAACCTGATGAGATEST: gi|88758145|gb|DY542286.1|DY542286
genomic: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatac ... cccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGAT
EST: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAG AGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAAEST: gi|37420874|gb|CF648134.1|CF648134
genomic: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatac ... cccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
EST: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAA AGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAAEST: gi|33097482|gb|CF057442.1|CF057442
genomic: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatac ... cccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
EST: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAG AGATGATCTTTTGAAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
genomic: AATCATACAAAAAGGGCGCTGCATAATTACCTTATAACAAAACTTTATAGgtgagaatac ... cccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAA
tgcactatggctttacaactttgctccaaactcttaaatatattgcccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAAGAGGAAGCAGATACGTGAAAATCTCAAGGTCCTTCAACAAGCTTACAAA
aaactcttaaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaatacttatttgctcttatttagaacacaacctattacatgttaagcaaaagataatttatgcactatggctttacaactttgctccaaactcttaaatatattgcccaattcagAGATGATCTTTTGGAAGACTTGCTCAAAGAACCTGATGAGATAACCATAAAGAGGAAGCAGATACGTGAAAATCTCAAGGTCCTTCAACAAGCTTACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT