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...aaaaaataaaatgacatacatttttgaatggttgtagtagtatataatagcctatttcgtggctagtacatcaatattaaatctggcttaaaatgttcagGTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCGAAGTACGGCGTCGACGAATACTTGGAG
species | Zea mays |
transcript | GRMZM2G128114_T02 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACGGAG GTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCGEST: gi|84980453|gb|DW530802.1|DW530802
genomic: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAGgtaagaaaca ... aaatgttcagGTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCG
EST: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAG GTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCGEST: gi|78107120|gb|DV525538.1|DV525538
genomic: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAGgtaagaaaca ... aaatgttcagGTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCG
EST: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAG GTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCGEST: gi|149000517|gb|EE037699.2|EE037699
genomic: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAGgtaagaaaca ... aaatgttcagGTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCG
EST: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAG GTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCGEST: gi|32856352|gb|CD996033.1|CD996033
genomic: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAGgtaagaaaca ... aaatgttcagGTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCG
EST: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAG GTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCGEST: gi|211258235|gb|FL463467.1|FL463467
genomic: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAGgtaagaaaca ... aaatgttcagGTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCG
EST: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAG GTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCG
genomic: CTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAGgtaagaaaca ... aaatgttcagGTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCG
aatagcctatttcgtggctagtacatcaatattaaatctggcttaaaatgttcagGTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCGAAGTACGGCGTCGACGAATACTTGGAG
tacatcaatattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaataaaatgacatacatttttgaatggttgtagtagtatataatagcctatttcgtggctagtacatcaatattaaatctggcttaaaatgttcagGTGGCACCATTTGGCGGAGTAAAGCAGTCTGGTCTTGGGAGAGAAGGATCGAAGTACGGCGTCGACGAATACTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG