1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gcataattgatttcttttcttctccagattttgaagaaaatattcctttttcaaaattttctaataacagttgctttgcagGTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAGTTAGCTATGTCAAATGGAAAG
species | Zea mays |
transcript | GRMZM2G124886_T02 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATTACAGATTTGACCTGGCTGTGCAGCTTGGTCGACTTGAAATAGCGAAG GTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAGEST: gi|111145650|gb|EE257974.1|EE257974
genomic: ATTACAGATTTGACCTGGCTGTGCAGCTTGGTCGACTTGAAATAGCGAAGgcataattga ... tgctttgcagGTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAG
EST: ATTACAGATTTGACCTGGCTGTGCAGCTTGGTCGACTTGAAATAGCGAAG GTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAGEST: gi|32929286|gb|CF034098.1|CF034098
genomic: ATTACAGATTTGACCTGGCTGTGCAGCTTGGTCGACTTGAAATAGCGAAGgcataattga ... tgctttgcagGTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAG
EST: ATTACAGATTTGACCTGGCTGTGCAGCTTGGTCGACTTGAAATAGCGAAG GTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAGEST: gi|60337834|gb|DN204807.1|DN204807
genomic: ATTACAGATTTGACCTGGCTGTGCAGCTTGGTCGACTTGAAATAGCGAAGgcataattga ... tgctttgcagGTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAG
EST: ATTACAGATTTGACCTGGCTGTGCAGCTTGGTCGACTTGAAATAGCGAAG GTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAG
genomic: ATTACAGATTTGACCTGGCTGTGCAGCTTGGTCGACTTGAAATAGCGAAGgcataattga ... tgctttgcagGTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAG
gattttgaagaaaatattcctttttcaaaattttctaataacagttgctttgcagGTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAGTTAGCTATGTCAAATGGAAAG
taataac putative branch site (score: 1)
ttgcttt putative PPT
aagaaaatattccttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcataattgatttcttttcttctccagattttgaagaaaatattcctttttcaaaattttctaataacagttgctttgcagGTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAGTTAGCTATGTCAAATGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA