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...aaaacaacatacatttttgaatggctggagtagtatacagtagcctactttgtggctagtacatcaatattaatctggcattctggtttaaaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCGAAGTACGGCATTGACGAGTACTTGGAG
species | Zea mays |
transcript | GRMZM2G119482_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAG GTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTTTAGGGAGAGAAGGATCGEST: gi|78179569|gb|DV549942.1|DV549942
genomic: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAGgtaagaaaca ... aaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCG
EST: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACGGAG GTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCGEST: gi|5608478|gb|AI902055.1|AI902055
genomic: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAGgtaagaaaca ... aaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCG
EST: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACGGAG GTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCGEST: gi|16916474|gb|BM072858.1|BM072858
genomic: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAGgtaagaaaca ... aaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCG
EST: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAG GTGGCGCCATTTGTCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCGEST: gi|6827661|gb|AW331304.1|AW331304
genomic: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAGgtaagaaaca ... aaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCG
EST: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAG GTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCGEST: gi|76921993|gb|DV168796.1|DV168796
genomic: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAGgtaagaaaca ... aaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCG
EST: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAG GTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCGEST: gi|76286305|gb|DV025873.1|DV025873
genomic: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAGgtaagaaaca ... aaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCG
EST: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAG GTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCGEST: gi|60348461|gb|DN215434.1|DN215434
genomic: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAGgtaagaaaca ... aaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCG
EST: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAG GTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCGEST: gi|60341947|gb|DN208920.1|DN208920
genomic: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAGgtaagaaaca ... aaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCG
EST: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACGGAG GTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCG
genomic: CTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAGgtaagaaaca ... aaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCG
tactttgtggctagtacatcaatattaatctggcattctggtttaaaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCGAAGTACGGCATTGACGAGTACTTGGAG
tattaat putative branch site (score: 472)
tacatcaatattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacaacatacatttttgaatggctggagtagtatacagtagcctactttgtggctagtacatcaatattaatctggcattctggtttaaaatgctcagGTGGCGCCATTTGGCGGAGTAAAGCAGTCTGGTCTAGGGAGAGAAGGATCGAAGTACGGCATTGACGAGTACTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
aaaacaa
- - - -catacat
- - - - - - - - ttgaatg
- - - - - - - - - - - -gctggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattctg