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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttaaagccttctacttttgtacttagtcatgcaataattattttctggctctaaaatgttaatgatttcacattattttacactctagGAACGCGTTAAGGAAAGGTCTCTGCACTCTAAGGACGGCACACGTTTGACAACAGGCTCTCACAACTTG

Basic information

species Zea mays
transcript GRMZM2G106056_T02
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345446|gb|DN212419.1|DN212419
EST:     CAAAGTTGGCGAGTGCATGCAG                         GAACGCGTTAAGGAAAGGTCTCTGCACTCTAAGGACGGCACACGTTTGACA
genomic: CAAAGTTGGCGAGTGCATGCAGgtcttaaagc ... tacactctagGAACGCGTTAAGGAAAGGTCTCTGCACTCTAAGGACGGCACACGTTTGACA
EST: gi|94480035|gb|EB708993.1|EB708993
EST:     CCAAATTTGAGGAAGAAGATATAATAGTCAAAGTTGGCGAGTGCATGCAG                         GAACGCGTTAAGGAAAGGTCTCTGCACTCTAAGGACGGCACACGTTTGACA
genomic: CCAAATTTGAGGAAGAAGATATAATAGTCAAAGTTGGCGAGTGCATGCAGgtcttaaagc ... tacactctagGAACGCGTTAAGGAAAGGTCTCTGCACTCTAAGGACGGCACACGTTTGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattattttctggctctaaaatgttaatgatttcacattattttacactctagGAACGCGTTAAGGAAAGGTCTCTGCACTCTAAGGACGGCACACGTTTGACAACAGGCTCTCACAACTTG
                       tgttaat  putative branch site (score: 3)
                                       ttatttt  putative PPT
                  taaaatgttaatgatt  TA-rich tract