1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...cttattgcagggtgtactgtgacaagtttttttgttgtcttagagattcttttctgaagtggcaaacatagaccaagatctgactgtttgtttcatatagATTTGCTGTCCTTGCATCACGTATGGAACAATATATCCAAGGACAATCCAGGGATTTAATTGATAAAGCATACACAAAGCTA
species | Zea mays |
transcript | GRMZM2G099056_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CGTAACGAAAGAAATGTGCGGCAAACTGGAATTCTAGCCTACATTCCAAG ATTTGCTGTCCTTGCATCACGTATGGAACAATATATCCAAGGGCAGTCCAGEST: gi|32933807|gb|CF038619.1|CF038619
genomic: CGTAACGAAAGAAATGTGCGGCAAACTGGAATTCTAGCCTACATTCCAAGgtatttgcac ... tttcatatagATTTGCTGTCCTTGCATCACGTATGGAACAATATATCCAAGGACAATCCAG
EST: CGTAACGAAAGAAATGTGCGGCAAACTGGAATTCTAGCCTACATTCCAAG ATTTGCTGTCCTTGCATCACGTATGGAACAATATATCCAAGGGCAGTCCAG
genomic: CGTAACGAAAGAAATGTGCGGCAAACTGGAATTCTAGCCTACATTCCAAGgtatttgcac ... tttcatatagATTTGCTGTCCTTGCATCACGTATGGAACAATATATCCAAGGACAATCCAG
attcttttctgaagtggcaaacatagaccaagatctgactgtttgtttcatatagATTTGCTGTCCTTGCATCACGTATGGAACAATATATCCAAGGACAATCCAGGGATTTAATTGATAAAGCATACACAAAGCTA
atctgac putative branch site (score: 51)
tttgtttc putative PPT
tttcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttattgcagggtgtactgtgacaagtttttttgttgtcttagagattcttttctgaagtggcaaacatagaccaagatctgactgtttgtttcatatagATTTGCTGTCCTTGCATCACGTATGGAACAATATATCCAAGGACAATCCAGGGATTTAATTGATAAAGCATACACAAAGCTA
- - -tgcaggg
- - - - - - tgtactg
- - - - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgttt