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gtatattcagatttactgtttatattcattgtatcatttcgaattgaactgaacagattggtgtttgatgtttttctctggttattatatctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGCCTTGGAGACGACCAAGAAAG
species | Zea mays |
transcript | GRMZM2G096107_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GCTCAAGCATCACTTGAGCGGGATGATGAG GATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGCEST: gi|18174696|gb|BM350084.1|BM350084
genomic: GCTCAAGCATCACTTGAGCGGGATGATGAGgtatattcag ... tctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGC
EST: AGGCTCAAGCATCACTTGAGCGGGATGATGAG GATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGCEST: gi|211480244|gb|FK978298.1|FK978298
genomic: AGGCTCAAGCATCACTTGAGCGGGATGATGAGgtatattcag ... tctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGC
EST: GCTCAAGCATCACTTGAGCGGGATGATGAG GATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCEST: gi|61119063|gb|DN560024.1|DN560024
genomic: GCTCAAGCATCACTTGAGCGGGATGATGAGgtatattcag ... tctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCC
EST: GCTCAAGCATCACTTGAGCGGGATGATGAG GATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCTTCCCTTCGCEST: gi|211224176|gb|FL079364.1|FL079364
genomic: GCTCAAGCATCACTTGAGCGGGATGATGAGgtatattcag ... tctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGC
EST: GCTCAAGCATCACTTGAGCGGGATGATGAG GATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGCEST: gi|211224178|gb|FL079366.1|FL079366
genomic: GCTCAAGCATCACTTGAGCGGGATGATGAGgtatattcag ... tctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGC
EST: GCTCAAGCATCACTTGAGCGGGATGATGAG GATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGCEST: gi|211224177|gb|FL079365.1|FL079365
genomic: GCTCAAGCATCACTTGAGCGGGATGATGAGgtatattcag ... tctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGC
EST: GCTCAAGCATCACTTGAGCGGGATGATGAG GATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGCEST: gi|28986412|gb|CB351123.1|CB351123
genomic: GCTCAAGCATCACTTGAGCGGGATGATGAGgtatattcag ... tctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGC
EST: AGGCTCAAGCATCACTTGAGCGGGATGATGAG GATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGCEST: gi|32931280|gb|CF036092.1|CF036092
genomic: AGGCTCAAGCATCACTTGAGCGGGATGATGAGgtatattcag ... tctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGC
EST: GCTCAAGCATCACTTGAGCGGGATGATGAG GATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCTTCCCTTCGC
genomic: GCTCAAGCATCACTTGAGCGGGATGATGAGgtatattcag ... tctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGC
tgaactgaacagattggtgtttgatgtttttctctggttattatatctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGCCTTGGAGACGACCAAGAAAG
gtttgat putative branch site (score: 107)
ttattatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattcagatttactgtttatattcattgtatcatttcgaattgaactgaacagattggtgtttgatgtttttctctggttattatatctgccgcagGATGTATATTTTGATGATGAATCTGCAGAGGTAGTAATCTCCTCCCTTCGCCTTGGAGACGACCAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA