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gtattaatactaaagtctggtggtttatttagtcgtagtactcaatgaatttactaacattcttgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTTCGAGCATCAGCATCGTCTGCGCTGGGCATTCTGATCAAGAGATCTAACA
species | Zea mays |
transcript | GRMZM2G086093_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAG GTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTTEST: gi|60354946|gb|DN221919.1|DN221919
genomic: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatac ... tgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
EST: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAG GTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTTEST: gi|67021578|gb|CO450327.1|CO450327
genomic: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatac ... tgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
EST: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAG GTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTTEST: gi|37376693|gb|CF624900.1|CF624900
genomic: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatac ... tgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
EST: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAG GTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCTCCAGACGCAATTGTTEST: gi|67025348|gb|CO454097.1|CO454097
genomic: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatac ... tgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
EST: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAG GTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
genomic: TGCTATCCTTTTTGGATGATCAGCGATTCATTGCTCCTTATTTCTCCCAGgtattaatac ... tgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTT
ggtggtttatttagtcgtagtactcaatgaatttactaacattcttgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTTCGAGCATCAGCATCGTCTGCGCTGGGCATTCTGATCAAGAGATCTAACA
tactaac putative branch site (score: 0)
cattctt CT-rich tract
aatgaatttactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaatactaaagtctggtggtttatttagtcgtagtactcaatgaatttactaacattcttgtgtgtcagGTATTTGCTACGTTGGTTGGTAGAATGAGCCAATCGCCAGACGCAATTGTTCGAGCATCAGCATCGTCTGCGCTGGGCATTCTGATCAAGAGATCTAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC