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gtaagtttaactgtgctactatattctttcgacttatctggattgaccacatatttcttggtaaaacttgctttggaaagatcaagaatgttctatataagctaatactaccatatgttatcggtgttgttgaatacaattttaatccctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAATGCAGCACCTTGAGGGAAAATATGAA
species | Zea mays |
transcript | GRMZM2G073054_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|60347950|gb|DN214923.1|DN214923
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: GTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|32934500|gb|CF039312.1|CF039312
genomic: GTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|60338294|gb|DN205267.1|DN205267
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|32837113|gb|CD976791.1|CD976791
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGACATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|32920624|gb|CF025436.1|CF025436
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|60394366|gb|DN227236.1|DN227236
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|91878000|gb|EB407957.1|EB407957
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|60345781|gb|DN212754.1|DN212754
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|211026372|gb|FL004586.1|FL004586
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTAT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTNGACCAGGCEST: gi|32864974|gb|CF004656.1|CF004656
genomic: TCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCT-Tgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGC
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|32930900|gb|CF035712.1|CF035712
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|32837751|gb|CD977429.1|CD977429
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|32921787|gb|CF026599.1|CF026599
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|32931179|gb|CF035991.1|CF035991
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GCAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAEST: gi|32933816|gb|CF038628.1|CF038628
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
EST: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTT GGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
genomic: TTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCTTgtaagtttaa ... cctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCA
taatactaccatatgttatcggtgttgttgaatacaattttaatccctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAATGCAGCACCTTGAGGGAAAATATGAA
ttttaat putative branch site (score: 292)
ttttaatccctttttc CT-rich tract
ttgaatacaattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttaactgtgctactatattctttcgacttatctggattgaccacatatttcttggtaaaacttgctttggaaagatcaagaatgttctatataagctaatactaccatatgttatcggtgttgttgaatacaattttaatccctttttcagGGAGATGCAGATTATCTTAGATATCGTGGTATGCAAGAGTTTGACCAGGCAATGCAGCACCTTGAGGGAAAATATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA