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gtaatgtggtaccagattgatcacaatttttcactcctttggtttcagcctactggttatgaacaccactctttgcccatgttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG
species | Zea mays |
transcript | GRMZM2G064023_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TGTCCTTTTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACEST: gi|6020672|gb|AW065480.1|AW065480
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACEST: gi|5847106|gb|AW000185.1|AW000185
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACEST: gi|67022591|gb|CO451340.1|CO451340
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACEST: gi|32859372|gb|CD999053.1|CD999053
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACEST: gi|71450119|gb|DR831169.1|DR831169
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACEST: gi|4776524|gb|AI665527.1|AI665527
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACEST: gi|76284364|gb|DV023932.1|DV023932
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACEST: gi|6952534|gb|AW424602.1|AW424602
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGCGGAGTTTTGCTGAACEST: gi|31361873|gb|CD446230.1|CD446230
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACEST: gi|149082724|gb|EE171942.2|EE171942
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
EST: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAG GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
genomic: TGTCCAAGTTATATGAAGTCGTACCTCCGATCCTCACTGAGCTAGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAAC
cctttggtttcagcctactggttatgaacaccactctttgcccatgttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG
tgttttctc CT-rich tract
ttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtggtaccagattgatcacaatttttcactcctttggtttcagcctactggttatgaacaccactctttgcccatgttttctcagGTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC