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gtctgccttctaccttctctttgcacagtttctaagtaattctgccggctaattttgtttggttatttaattatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCCTGAAGCT
species | Zea mays |
transcript | GRMZM2G063909_T03 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATCACACTGTCTTGTTCGGTGTTTCGAGAANCATGGGGGTAGGATCCCAG CTCATCTGGGACCGTGCCCCTTGGCCTGCCACTCGAGAGEST: gi|14208440|gb|BG842118.1|BG842118
genomic: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCC-TTGGCCTGCCACTCGAGAG
EST: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTTEST: gi|60357508|gb|DN224481.1|DN224481
genomic: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTT
EST: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTTEST: gi|78076903|gb|DV505337.1|DV505337
genomic: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTT
EST: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTTEST: gi|60354991|gb|DN221964.1|DN221964
genomic: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTT
EST: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCAEST: gi|60345083|gb|DN212056.1|DN212056
genomic: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCA
EST: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCAEST: gi|50331232|gb|CO526358.1|CO526358
genomic: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCA
EST: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTTEST: gi|40334210|gb|CK368280.1|CK368280
genomic: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTT
EST: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTCEST: gi|60400601|gb|DN233408.1|DN233408
genomic: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTC
EST: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTTEST: gi|17932431|gb|BM269391.1|BM269391
genomic: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTT
EST: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTTEST: gi|37394364|gb|CF634455.1|CF634455
genomic: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTT
EST: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTT
genomic: ATCACACTGTCTTGTTCGGTGTTTCGAGAAGCATGGGGGTAGGATCCCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTT
agtttctaagtaattctgccggctaattttgtttggttatttaattatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCCTGAAGCT
taattttgtttggtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgccttctaccttctctttgcacagtttctaagtaattctgccggctaattttgtttggttatttaattatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTCGAGAGGCCCAAGAGCGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCCTGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC