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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actagacactagacagggattattatttttgtactaaataatcttcatacctgttccatgcagactgtttttgcaaactcatcttttcctgttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAG

Basic information

species Zea mays
transcript GRMZM2G056393_T02
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056393_T01 (Zea mays), 3'ss of exon 18
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 3'ss of exon 18
actagacactagacagggattattatttttgtacta-aataatcttcatacctgttccatgcagactgtttttgcaaactcat------cttttcctgttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAG
         |   ||  | || | |  |   ||||   | ||    ||| |   ||   ||  || | |  |   ||||| |       | | ||    ||| ||||||||| ||||||||||||||||||||| |||||||| |||| |||  ||| |||
-------gttttccatagtttgtaacatagttactgtgagaagtaccattctcattttttgttgagtttaataataaactaacgaatcacatctcgctctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32933717|gb|CF038529.1|CF038529
EST:     CCATTGTTGGAAATGAGCAGGAAGGTGACGACACCGTTGTAGTTTGCCAT                         GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGTGACT
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
EST: gi|32932818|gb|CF037630.1|CF037630
EST:     TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCGTTGTAGTTTGCCAT                         GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGTGACT
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
EST: gi|211184463|gb|FL030548.1|FL030548
EST:     TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCAT                         GT-CCGCTAAACAATATGTTTGGATATGCA-CAGC
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGC
EST: gi|6020648|gb|AW065681.1|AW065681
EST:     TCATTGNTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCAT                         GTTCCGCTAAACAATATGTTTGGATATGCAACAG
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAG
EST: gi|33093919|gb|CF053913.1|CF053913
EST:     TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCGTTGTAGTTTGCCAT                         GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGTGACT
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
EST: gi|69351603|gb|DR452190.1|DR452190
EST:     TCATTGTTGGAAATGGGCAGGAAGGTGACGACACCATTGTAGTTTGCCAT                         GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catacctgttccatgcagactgtttttgcaaactcatcttttcctgttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAG
                                ctcatcttttcctgtt  CT-rich tract
                    tgttttt  TA-rich tract