1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...actagacactagacagggattattatttttgtactaaataatcttcatacctgttccatgcagactgtttttgcaaactcatcttttcctgttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAG
species | Zea mays |
transcript | GRMZM2G056393_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CCATTGTTGGAAATGAGCAGGAAGGTGACGACACCGTTGTAGTTTGCCAT GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGTGACTEST: gi|84980317|gb|DW530666.1|DW530666
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
EST: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCAT GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTEST: gi|32932818|gb|CF037630.1|CF037630
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
EST: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCGTTGTAGTTTGCCAT GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGTGACTEST: gi|211492457|gb|FL459662.1|FL459662
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
EST: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCAT GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTEST: gi|211184463|gb|FL030548.1|FL030548
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
EST: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCAT GT-CCGCTAAACAATATGTTTGGATATGCA-CAGCEST: gi|6020648|gb|AW065681.1|AW065681
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGC
EST: TCATTGNTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCAT GTTCCGCTAAACAATATGTTTGGATATGCAACAGEST: gi|33093919|gb|CF053913.1|CF053913
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAG
EST: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCGTTGTAGTTTGCCAT GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGTGACTEST: gi|61119855|gb|DN560816.1|DN560816
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
EST: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCAT GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTEST: gi|69351603|gb|DR452190.1|DR452190
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
EST: TCATTGTTGGAAATGGGCAGGAAGGTGACGACACCATTGTAGTTTGCCAT GTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
genomic: TCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGTAGTTTGCCATgtatgtaaat ... gttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACT
catacctgttccatgcagactgtttttgcaaactcatcttttcctgttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAG
ctcatcttttcctgtt CT-rich tract
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actagacactagacagggattattatttttgtactaaataatcttcatacctgttccatgcagactgtttttgcaaactcatcttttcctgttctctcagGTTCCGCTAAACAATATGTTTGGATATGCAACAGCTATTCGATCAGCGACTCAG
- - - - - - - - - - - - - - - - - - - - - - -catacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca