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...acatacattaattattgaatgaatttgttaaaaagctaaaacgatttttattttggaacatagggagtacttgatatgctgacaatttttattcttgcagTTCATCCAATTGAGACTGGATCCGGCTAGTGGCAACACTGTTCCAGCTAATGGAAGTGGTTCAGTCACACAAGGGCTCAACATCACCAATAACCAACAGG
species | Zea mays |
transcript | GRMZM2G054210_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TGACATCTAGTACTTTTACAGATTTTATTTTTCAGGCTGCTGTTCCAAAG TTCATCCAATTGAGACTGGATCCGGCTAGTGGCAACACTGTTCCAGCTAATEST: gi|71306471|gb|DR789383.1|DR789383
genomic: TGACATCTAGTACTTTTACAGATTTTATTTTTCAGGCTGCTGTTCCAAAGgtaaaatctt ... attcttgcagTTCATCCAATTGAGACTGGATCCGGCTAGTGGCAACACTGTTCCAGCTAAT
EST: TGACATCTAGTACTTTTACAGATTTTATTTTTCAGGCTGCTGTTCCAAAG TTCATCCAATTGAGACTGGATCCGGCTAGTGGCAACACTGTTCCAGCTAATEST: gi|71305691|gb|DR788985.1|DR788985
genomic: TGACATCTAGTACTTTTACAGATTTTATTTTTCAGGCTGCTGTTCCAAAGgtaaaatctt ... attcttgcagTTCATCCAATTGAGACTGGATCCGGCTAGTGGCAACACTGTTCCAGCTAAT
EST: TTTTCAGGCTGCTGTTCCAAAG TTCATCCAATTGAGACTGGATCCGGCTAGTGGCAACACTGTTCCAGCTAAT
genomic: TTTTCAGGCTGCTGTTCCAAAGgtaaaatctt ... attcttgcagTTCATCCAATTGAGACTGGATCCGGCTAGTGGCAACACTGTTCCAGCTAAT
ttttattttggaacatagggagtacttgatatgctgacaatttttattcttgcagTTCATCCAATTGAGACTGGATCCGGCTAGTGGCAACACTGTTCCAGCTAATGGAAGTGGTTCAGTCACACAAGGGCTCAACATCACCAATAACCAACAGG
tgctgac putative branch site (score: 41)
tttttattctt putative PPT
acaatttttattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatacattaattattgaatgaatttgttaaaaagctaaaacgatttttattttggaacatagggagtacttgatatgctgacaatttttattcttgcagTTCATCCAATTGAGACTGGATCCGGCTAGTGGCAACACTGTTCCAGCTAATGGAAGTGGTTCAGTCACACAAGGGCTCAACATCACCAATAACCAACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
acataca
- - - - - - - ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgac