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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttctatttccctcctgtagttctagtattttattacgcatttcatgttctaatacagaacttgttctcctttgttgtccaatagTATGCATCTGGTGACATGTCTTCCATCTTGCTATGGGATCTTGACAAGGAACAACAACTCAGCACTATTCAGTCATCTGGTGATAGTGCCATTTCTTCAC

Basic information

species Zea mays
transcript GRMZM2G048067_T02
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 18
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 3'ss of exon 18
----------gtaattttctatttccctcctgtag-ttctagtattttattacgcatttcatgttctaatacagaacttgttctcctttgttgtccaatagTATGCATCTGGTGACATGTCTTCCATCTTGCTATGGGATCTTGACAAGGAACAACAACTCAGCACTATTCAGTCATCTGGTGATAGTGCCATTTCTTCAC
            |   || |       |  || |  ||  | | | | ||||  ||   | | || |||||  ||||||  || | ||||||||  || |||||||||||||||||||||| || ||| |  ||||||||||||||||||||||||   ||| ||| || |||||| ||| |||||| |  |||||  | |
gtgaaactctaaagccttttcccgatgttttgcaaattgcaatgtctcattaatcaaggc-tattgtaatatggaacttactc-cttttgttgtaaaacagTATGCATCTGGTGACATGTCCTCTATCCTTGTATGGGATCTTGACAAGGAACAACTTGTCAACACCATCCAGTCAACTGCTGATAGCGGGATTTCAGCTC

upper sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 18
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 3'ss of exon 19
--gtaattttctatttccctcctgtagttct---------agtattttattacgcatttcatgttctaatacagaacttgttctcctttgttgtccaatagTATGCATCTGGTGACATGTCTTCCATCTTGCTATGGGATCTTGACAAGGAACAACAACTCAGCACTATTCAGTCATCTGGTGATAGTGCCATTTCTTCAC--
  | || | |  |||    ||| |  ||| |         | | | | ||||  ||   | | || |||||  ||||||  || | ||||||||  || |||||||||||||||||||||| || ||| |  |||||||||||||||||||||||    ||| ||| || |||||| ||| |||||| |  |||||  | |  
gtgaaactctaaattcttttcccgatgttttgcaaattgcaatgtctcattaatcaaggc-tattgtaatatggaacttactc-cttttgttgtaaaacagTATGCATCTGGTGACATGTCCTCTATCCTTGTATGGGATCTTGACAAGGAACAAG---TCAACACCATCCAGTCAACTGCTGATAGCGGGATTTCAGCTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattacgcatttcatgttctaatacagaacttgttctcctttgttgtccaatagTATGCATCTGGTGACATGTCTTCCATCTTGCTATGGGATCTTGACAAGGAACAACAACTCAGCACTATTCAGTCATCTGGTGATAGTGCCATTTCTTCAC
                 ttctaat  putative branch site (score: 2)
                              cttgttctcctttgtt  putative PPT
                 ttctaata  TA-rich tract