1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gttagaaatcagaacacaaccatccttgatactgaatctgagacgcccacccaacagctaacattcgtcttggttgttttagGGCTACGCGTACCTGCCGTCGGGCGTGTGCATGTCAGGAATGGGTCGGCATGTCTCATTCGACCAAGCTGTAGCGTGGAAGGTGCTCGGCGAGGACAGCA
species | Zea mays |
transcript | GRMZM2G042250_T03 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AGTCAGGAAGGAAAGCAATATTCTCAGATATCTCAAAACTAATGGAACAG GGATACGCGTACCTAAAATCGGGCGTGTGCATGTCAGGAATGGGTCGGCATEST: gi|18964323|gb|BM660939.1|BM660939
genomic: AGTCAGGAAGGAAAGCAATATTCTCAGATATCTCAAAACTAATGGAACAGgttagaaatc ... gttgttttagGGCTACGCGTACCTGCCGTCGGGCGTGTGCATGTCAGGAATGGGTCGGCAT
EST: AGTCAGGAAGGAAAGCAATATTCTCAGATATCTCAAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCGGGCGTGTGCATGTCAGGAATGGGTCGGCATEST: gi|19855123|gb|BQ060175.1|BQ060175
genomic: AGTCAGGAAGGAAAGCAATATTCTCAGATATCTCAAAACTAATGGAACAGgttagaaatc ... gttgttttagGGCTACGCGTACCTGCCGTCGGGCGTGTGCATGTCAGGAATGGGTCGGCAT
EST: AGTCAGGAAGGAAAGCAATATTCTCAGATATCTCAAAACTAATGGAACAG GGCTACGCGTACCTGCCGTCGGGCGTGTGCATGTCAGGAATGGGTCGGCAT
genomic: AGTCAGGAAGGAAAGCAATATTCTCAGATATCTCAAAACTAATGGAACAGgttagaaatc ... gttgttttagGGCTACGCGTACCTGCCGTCGGGCGTGTGCATGTCAGGAATGGGTCGGCAT
gatactgaatctgagacgcccacccaacagctaacattcgtcttggttgttttagGGCTACGCGTACCTGCCGTCGGGCGTGTGCATGTCAGGAATGGGTCGGCATGTCTCATTCGACCAAGCTGTAGCGTGGAAGGTGCTCGGCGAGGACAGCA
agctaac putative branch site (score: 2)
ttgtttt putative PPT
ttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagaaatcagaacacaaccatccttgatactgaatctgagacgcccacccaacagctaacattcgtcttggttgttttagGGCTACGCGTACCTGCCGTCGGGCGTGTGCATGTCAGGAATGGGTCGGCATGTCTCATTCGACCAAGCTGTAGCGTGGAAGGTGCTCGGCGAGGACAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG