Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgccattcatatccattttaatgtaagatcatatttgcccagtgtcattgatacattgttattttcagGTATTGATAAAATAATTGGTTTTGCTTTGAGCCATCAACTTAAGAACTGTACAAATCCAGACCCCCCTTTGAGTAATGTGCAGTTTGTTCTATCCAGCGA

Basic information

species Zea mays
transcript GRMZM2G042074_T01
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G042074_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os03g22420.2 (Oryza sativa), 3'ss of exon 18
gtgagtgccattcatatccattttaatgtaagatcata---tttgcccagtgtcattgatacattgttatttt-cagGTATTGATAAAATAATTGGTTTTGCTTTGAGCCATCAACTTAAGAACTGTACAAATCCAGACCCCCCTTTGAGTAATGTGCAGTTTGTTCTATCCAGCGA---
||||||  ||||| ||| ||| ||  |   | ||   |   ||     |   | || | | || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||||| |||||||||   || |||| |||| |  ||   |||||| || ||   
gtgagtagcattcctattcatctttcttctatattgcaaatttcaataaacatgatgggtgcactgttatttttcagGTATTGATAAAATAGTTGGTTTTGCTTTGAGTCATCAACTTAAGCACTCTACAATTCCAGACCC---TTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67017525|gb|CO446274.1|CO446274
EST:     CACTGATCTTGAGGCGATATTGGTCAAGGATCGCGTTCTTACAAATGAGT                         GTATTGATAAAATAATTGGTTTTGCTTTGAGCCATCAACTTAAGAACTGTA
genomic: CACTGATCTTGAGGCGATATTGGTCAAGGATCGCGTTCTTACAAATGAGTgtgagtgcca ... ttattttcagGTATTGATAAAATAATTGGTTTTGCTTTGAGCCATCAACTTAAGAACTGTA
EST: gi|67033220|gb|CO461969.1|CO461969
EST:     CACTGATCTTGAGGCGATATTGGTCAAGGATCGCGTTCTTACAAATGAGT                         GTATTGATAAAATAATTGGTTTTGCTTTGAGCCATCAACTTAAGAACTGTA
genomic: CACTGATCTTGAGGCGATATTGGTCAAGGATCGCGTTCTTACAAATGAGTgtgagtgcca ... ttattttcagGTATTGATAAAATAATTGGTTTTGCTTTGAGCCATCAACTTAAGAACTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttaatgtaagatcatatttgcccagtgtcattgatacattgttattttcagGTATTGATAAAATAATTGGTTTTGCTTTGAGCCATCAACTTAAGAACTGTACAAATCCAGACCCCCCTTTGAGTAATGTGCAGTTTGTTCTATCCAGCGA
                                             ttattttc  CT-rich tract
                                     atacattgttatttt  TA-rich tract