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gtttactttctttcgtatactgtgctgctccatgtctcaaccatcttgaattttggacattttcatccgaaacttgctttgttcagGCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGGGTATACATGGTAAGCATGGACGAGGAGGTACACGGAAACAGAGCTGACG
species | Zea mays |
transcript | GRMZM2G040247_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATTACCGGACAGAAACTTCATTGCGAAATGGATGCAACGATATACTTAAG GCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGGEST: gi|71445370|gb|DR826420.1|DR826420
genomic: ATTACCGGACAGAAACTTCATTGCGAAATGGATGCAACGATATACTTAAGgtttactttc ... ctttgttcagGCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGG
EST: ATTACCGGACAGAAACTTCATTGCGAAATGGATGCAACGATATACTTAAG GCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGGEST: gi|40303669|gb|CK348056.1|CK348056
genomic: ATTACCGGACAGAAACTTCATTGCGAAATGGATGCAACGATATACTTAAGgtttactttc ... ctttgttcagGCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGG
EST: ATTACCGGACAGAAACTTCATTGCGAAATGGATGCAACGATATACTTAAG GCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGGEST: gi|74239642|gb|DT647556.1|DT647556
genomic: ATTACCGGACAGAAACTTCATTGCGAAATGGATGCAACGATATACTTAAGgtttactttc ... ctttgttcagGCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGG
EST: ATTACCGGACAGAAACTTCATTGCGAAATGGATGCAACGATATACTTAAG GCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGG
genomic: ATTACCGGACAGAAACTTCATTGCGAAATGGATGCAACGATATACTTAAGgtttactttc ... ctttgttcagGCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGG
atgtctcaaccatcttgaattttggacattttcatccgaaacttgctttgttcagGCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGGGTATACATGGTAAGCATGGACGAGGAGGTACACGGAAACAGAGCTGACG
cttgcttt CT-rich tract
ttgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttactttctttcgtatactgtgctgctccatgtctcaaccatcttgaattttggacattttcatccgaaacttgctttgttcagGCTGACTGTGTTAACCTTTTGGTTAAATACTACCACGAGGCTCGGCGTGGGGTATACATGGTAAGCATGGACGAGGAGGTACACGGAAACAGAGCTGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA