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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtatgctgaagcttgtttcgtccttcatcattatgggcatgtgttctatattgatcgtattgactctttttgaattggttgagcatattttaaatcttcttccccttgataccttctttcatcaacatcaaagCTGACTACCAAGTGGTCCAAGAACGATGACAATGCATCCATCCAAAGAAGAACAAAAACAACGACGACAAAGCGTCCACCTATTTTCCACCTAGGGGTGC

Basic information

species Zea mays
transcript GRMZM2G036050_T01
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5608203|gb|AI901870.1|AI901870
EST:     TTCACAAGCTTAGGCTTGTGTTGTCCGAAATTTGGCGTGGGATGACCGTGACAAAGTTTTGGCATCAGTTTCCGGATGACCGTG
genomic: TTCACAAGCTTAGGCTTGTGTTGTCCGAAATTTGGCGTGGGATGACCGTGACAAAGTTTTGGCATCAGTTTCCGGATGACCGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagcatattttaaatcttcttccccttgataccttctttcatcaacatcaaagCTGACTACCAAGTGGTCCAAGAACGATGACAATGCATCCATCCAAAGAAGAACAAAAACAACGACGACAAAGCGTCCACCTATTTTCCACCTAGGGGTGC
                         ccttgat  putative branch site (score: 5)
      atattttaaatcttct  TA-rich tract