1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...gtattgaactcgtacgtttctccttacatgttctctggagatttggcattttagaggactgatttataggaggaataaaatatctttctcatgattttagGAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAATTGTTGGGAGAGCTCAGATCATTGGATGTGAAGAAAGAGAAACAATGAA
species | Zea mays |
transcript | GRMZM2G030596_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATGCTTACAATACGAGGGATCAGAGAAACAACTTGTCCTGAAG GAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAAEST: gi|31349834|gb|CD434191.1|CD434191
genomic: ATGCTTACAATACGAGGGATCAGAGAAACAACTTGTCCTGAAGgtatacctct ... atgattttagGAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAA
EST: ATGCTTACAATACGAGGGATCAGAGAAACAACTTGTCCTGAAG GAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAAEST: gi|78121767|gb|DV540151.1|DV540151
genomic: ATGCTTACAATACGAGGGATCAGAGAAACAACTTGTCCTGAAGgtatacctct ... atgattttagGAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAA
EST: CAGAGAAACAACTTGTCCTGAAG GAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAAEST: gi|78075869|gb|DV504303.1|DV504303
genomic: CAGAGAAACAACTTGTCCTGAAGgtatacctct ... atgattttagGAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAA
EST: ATGCTTACAATACGAGGGATCAGAGAAACAACTTGTCCTGAAG GAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAAEST: gi|6742642|gb|AW313457.1|AW313457
genomic: ATGCTTACAATACGAGGGATCAGAGAAACAACTTGTCCTGAAGgtatacctct ... atgattttagGAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAA
EST: ATGCTTACAATACGAGGGATCAGAGAAACAACTTGTCCTGAAG GAACAAAAGCTCCGATCTGAAATTGCTGTGGAGGAAAAGAAGTATCAGGAAEST: gi|78114930|gb|DV533318.1|DV533318
genomic: ATGCTTACAATACGAGGGATCAGAGAAACAACTTGTCCTGAAGgtatacctct ... atgattttagGAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAA
EST: ATGCTTACAATACGAGGGATCAGAGAAACAACTTGTCCTGAAG GAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAAEST: gi|211385800|gb|FL436087.1|FL436087
genomic: ATGCTTACAATACGAGGGATCAGAGAAACAACTTGTCCTGAAGgtatacctct ... atgattttagGAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAA
EST: ATGCTTHCAATACGAGGGATCAGAGAAACAACTTGTCCTGAAG GAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAA
genomic: ATGCTTACAATACGAGGGATCAGAGAAACAACTTGTCCTGAAGgtatacctct ... atgattttagGAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAA
gcattttagaggactgatttataggaggaataaaatatctttctcatgattttagGAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAATTGTTGGGAGAGCTCAGATCATTGGATGTGAAGAAAGAGAAACAATGAA
gactgat putative branch site (score: 3)
tctttctcat putative PPT
aataaaatatctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgaactcgtacgtttctccttacatgttctctggagatttggcattttagaggactgatttataggaggaataaaatatctttctcatgattttagGAACAAAAGCTCCGATCTGAAATTGCTGAGGTGGAAAAGAAGTATCAGGAATTGTTGGGAGAGCTCAGATCATTGGATGTGAAGAAAGAGAAACAATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA